Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f23
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    29   0.99 
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   5.3  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.0  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   7.0  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   7.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.2  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    25   9.2  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   9.2  

>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 756 GIYAIL*GLHGTYLIYAAIVTYC-LVVSWIFLPETKDRTLQE 634
           G+Y +  G+    LI A + T+C L V+W  L E  +R   E
Sbjct: 497 GLYGLWIGIGAAILIIAGVETWCSLHVNWDHLVELANRQFDE 538


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 778 FITVKTYRYLRNSLGITRNVFDIRS 704
           FIT   Y++LRN + I +N   +RS
Sbjct: 771 FITENIYQHLRNYMPIDKNEISLRS 795


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 193 RKLCGRRSMKFSTLIENTEKKC 128
           RKL  +RS KFS+++ +++ +C
Sbjct: 141 RKLIPKRSAKFSSMVGSSDTRC 162


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 41  KYMVCSVCNIFFIDLMYLLYIIL 109
           K ++CS C+I    L++LLY+ L
Sbjct: 202 KALICSTCSISAALLLFLLYVRL 224


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 41  KYMVCSVCNIFFIDLMYLLYIIL 109
           K ++CS C+I    L++LLY+ L
Sbjct: 180 KALICSTCSISAALLLFLLYVRL 202


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 560 VSIKISAVFSSLSLVGGPPLNSSSISCRVLSLVSGKNIQLT 682
           + +  +A+ +  SL   P LNS +++C +LS     N   T
Sbjct: 600 IDLSYNAITNIASLSECPKLNSINVACNLLSFYEYSNPSAT 640


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +2

Query: 506 NYVLIKNADHNFFFF--SYFVSIKISAVFSSLSLVGGPPLNSSSISCRVLSLVSGKN 670
           N   I + D NF F       +  ISA+F  L  VG P L   SI       +S KN
Sbjct: 786 NQAAISSLDWNFAFIHSKSAENQAISAIFMFLHTVGAPILTCISIPLFSFEPLSKKN 842


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 271 YSK*HLYHLYNIYILIREAKTLYPFLRKLCGRR 173
           Y+  H Y ++N  ILIRE  T+  F+  + G R
Sbjct: 203 YNILHEYRIHNADILIREDITVDDFIDLVMGNR 235


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 672 IFLPETKDRTLQEIEDEFRGGPPTRDRDENTAEI 571
           I LPE+    +Q  E E   G  TRD+    AE+
Sbjct: 112 ISLPESHPEDIQRKEFETENGKNTRDQPSPLAEV 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,174
Number of Sequences: 5004
Number of extensions: 56561
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)