Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16f23
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001... 40 0.002
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 38 0.012
04_04_0593 - 26480036-26481438,26481915-26482083 37 0.021
12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073 36 0.036
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 36 0.036
07_03_1045 + 23528768-23528879,23528979-23530399 36 0.048
04_04_1600 + 34704527-34704758,34705393-34706777 34 0.15
01_07_0304 - 42628086-42628104,42628828-42630263 34 0.15
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387 33 0.19
03_02_0023 + 5065962-5066079,5066179-5067614 33 0.34
02_05_1340 + 35797923-35799881 33 0.34
07_03_1046 - 23531218-23532638,23532781-23532868 32 0.44
04_04_1601 + 34707975-34708209,34708598-34709970 32 0.44
03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998... 32 0.59
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 31 1.4
10_06_0088 - 10538037-10539463,10539696-10539789 31 1.4
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 31 1.4
04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500 31 1.4
03_02_0024 + 5079690-5081351 31 1.4
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727... 30 1.8
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 30 2.4
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 29 3.1
11_04_0293 + 15926561-15928834 29 3.1
11_06_0421 + 23331702-23331723,23332161-23332197,23333397-233335... 29 4.1
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753... 29 4.1
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421... 29 4.1
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50... 29 4.1
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 28 7.2
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 28 7.2
09_04_0120 + 14836644-14836949,14837038-14837664,14837916-14838359 28 7.2
07_03_0630 - 20097672-20097772,20097983-20102012 28 7.2
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 28 9.6
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 28 9.6
>05_07_0239 -
28599452-28599564,28599685-28599799,28600051-28600116,
28600270-28600329,28600571-28600617,28601118-28601202,
28601554-28601646,28601727-28601791,28601942-28602017,
28602110-28602175,28603082-28603141,28603400-28603489,
28603594-28603893
Length = 411
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFR 616
GT+ IYAA+ LV +++PETK RTL+EI FR
Sbjct: 375 GTFAIYAAVCAGTLVFVCLWVPETKGRTLEEIAFSFR 411
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFR 616
GT++ Y + + LV +++PETK RTL+EI+ FR
Sbjct: 411 GTFVSYMVVSAFTLVFVILWVPETKGRTLEEIQWSFR 447
>04_04_0593 - 26480036-26481438,26481915-26482083
Length = 523
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTR 598
G + ++A I T + + +PETK +TL++IE F GG R
Sbjct: 458 GMFFVFAVISTVSVAFVYFCVPETKGKTLEQIEMMFEGGKEWR 500
>12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073
Length = 513
Score = 35.9 bits (79), Expect = 0.036
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -3
Query: 735 GLHGTYLIYAAIVTYCLVVSWIF----LPETKDRTLQEIEDEFRGGPPT 601
G+ GT+ ++AA C +W+F LPETK R+L+E+E F P+
Sbjct: 463 GMAGTFYLFAA----CSAAAWVFVYACLPETKGRSLEEMEALFDAAHPS 507
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 35.9 bits (79), Expect = 0.036
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF 619
GT+L Y + + LV ++PETK RTL+EI+ F
Sbjct: 440 GTFLSYMIVSAFTLVFVIFWVPETKGRTLEEIQFSF 475
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 35.5 bits (78), Expect = 0.048
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDRDENTAE 574
G++ +Y+ I V + +LPET+ RTL+E+ F + DE E
Sbjct: 450 GSFFLYSGIAALAWVFFYTYLPETRGRTLEEMSKLFGDTAAASESDEPAKE 500
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGG 610
G + ++A I +V + ++PET +TL+EIE F GG
Sbjct: 477 GAFSVFAVISALSVVFVYRYVPETSGKTLEEIELLFGGG 515
>01_07_0304 - 42628086-42628104,42628828-42630263
Length = 484
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFR 616
G++ +YA + + + + +LPET+ RTL+++ + FR
Sbjct: 396 GSFFLYAGVASLAWLFFFTYLPETRGRTLEQMGELFR 432
>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
Length = 487
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF 619
G + +YAAI V + LPET+ R+L+++E+ F
Sbjct: 449 GAFYLYAAIAAASFVFIYACLPETRGRSLEDMEELF 484
>03_02_0023 + 5065962-5066079,5066179-5067614
Length = 517
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDRDE 586
G++ +YA+I V + FLPETK ++L++ F G T D D+
Sbjct: 455 GSFYLYASIAAAGWVFMYFFLPETKGKSLEDTVKLF--GKDTDDDDD 499
>02_05_1340 + 35797923-35799881
Length = 652
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -3
Query: 735 GLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGG 610
GL G + IYAA+ LV + +PETK L+ I D F G
Sbjct: 596 GLAGLFAIYAAVCCVALVFVALRVPETKGLPLEVIIDFFNVG 637
>07_03_1046 - 23531218-23532638,23532781-23532868
Length = 502
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDRDENTA 577
G++ +YAAI + V + LPET+ +TL+EI F + +++ A
Sbjct: 443 GSFFLYAAISSLAWVFFFTRLPETRGQTLEEIGKVFGMDDTAMEAEDSAA 492
>04_04_1601 + 34707975-34708209,34708598-34709970
Length = 535
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDRDENTAEILME 562
G + +AAI +V +F+PE ++L++IE F G + + AE L++
Sbjct: 476 GAFAAFAAISALSVVFVHVFVPEMSGKSLEQIESLFGAGAGAGEVELGDAEHLVQ 530
>03_03_0040 -
13999040-13999179,13999524-13999638,13999759-13999818,
14000007-14000060,14000274-14000333,14000418-14000480,
14000552-14000595,14000671-14000755,14000904-14001028,
14001368-14001432,14001460-14001518,14001678-14001743,
14001870-14001935,14002019-14002105,14002168-14002257,
14002378-14002440,14003153-14003419
Length = 502
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIED 625
GT+ +++A ++ + +PETK RTL+EI+D
Sbjct: 457 GTFFMFSAASLITILFVVMVVPETKGRTLEEIQD 490
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF 619
G + +YA + V +++LPET+ R+L+ ++ F
Sbjct: 441 GCFFLYAGVAAAACVFVYVWLPETRGRSLENMDMVF 476
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDR 592
G + ++A + ++ PET+ + L+EIE+ F G R R
Sbjct: 440 GAFFLFAGLAVAAATFFYLLCPETQGKPLEEIEEVFSQGWRARRR 484
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 735 GLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIE 628
G T+ ++ A+ + LVV + +PETK +E+E
Sbjct: 516 GTSATFFLFCAVSFFALVVVFFTVPETKGLQFEEVE 551
>04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500
Length = 517
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 729 HGTYLIYAAIVTYCLVVSWIFLPETKDRTLQ 637
+ T+L YAA V W FLPETK L+
Sbjct: 454 YATFLYYAAWVAVMTAFVWAFLPETKGVPLE 484
>03_02_0024 + 5079690-5081351
Length = 553
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRG 613
G++ +YA I V + FLPET+ R+L++ F G
Sbjct: 489 GSFYLYAGIAAAGWVFMFFFLPETQGRSLEDTVKLFGG 526
>02_02_0155 +
7272563-7272630,7272934-7273031,7273491-7274057,
7275121-7276085,7276201-7276388,7276497-7276938
Length = 775
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 735 GLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGG 610
GL G + IYA + + V ++ +PETK L+ I + F G
Sbjct: 725 GLAGVFGIYAVVCSIAFVFVFLKVPETKGMPLEVITEFFAVG 766
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIE 628
G + +YA + V ++ LPET+ R+L++++
Sbjct: 439 GCFFLYAGVAAVACVFVYVRLPETRGRSLEDMD 471
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIE 628
GT+ ++A + ++ +PETK +TL+EI+
Sbjct: 363 GTFFLFALVCAVAILFIVKIVPETKGKTLEEIQ 395
>11_04_0293 + 15926561-15928834
Length = 757
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 735 GLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGG 610
GL G + YAA+ LV + +PETK L+ I + F G
Sbjct: 704 GLAGVFSFYAAVCCVALVFVALKVPETKGLPLEVIIEFFNVG 745
>11_06_0421 +
23331702-23331723,23332161-23332197,23333397-23333533,
23333675-23334241,23335068-23335777,23335915-23336102,
23336489-23336918
Length = 696
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 735 GLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFR 616
GL G IYA + LV ++ +PETK L+ I + F+
Sbjct: 650 GLSGACAIYAFVCCLVLVFVYLRVPETKGLPLELIAEIFK 689
>04_04_0078 +
22573413-22573554,22573637-22573959,22574681-22575313,
22575383-22575838
Length = 517
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 729 HGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEI 631
+GT+ YAA V V +FLPETK L+ +
Sbjct: 456 YGTFAYYAAWVAVMTVFIAVFLPETKGVPLESM 488
>03_06_0498 -
34341441-34341575,34341808-34341945,34342019-34342117,
34342320-34342400,34342548-34342610,34342717-34342764,
34343033-34343410,34345413-34345537,34345635-34345701,
34345797-34345856,34346495-34346621,34346670-34346986
Length = 545
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 720 YLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDE 622
+L++ AI LV + +PETK TL+EIE +
Sbjct: 510 FLLFGAISLLSLVFVILKVPETKGLTLEEIESK 542
>01_01_0062 +
497728-497922,499444-499481,499576-499598,501156-501262,
501356-501407,501475-501559,501910-502000,502251-502289,
502383-502455,503285-503344,503439-503512,503606-503698,
503779-503880,504048-504128,504352-504426,504486-504614,
504705-504809
Length = 473
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 610 PSSKFIFNFL*SPVFGLR*KYPAHDQAISH 699
PS KF FL S FG K+P D+ +SH
Sbjct: 390 PSIKFFKEFLLSQDFGCDEKFPITDERVSH 419
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIE 628
GT+ +A + V + FLPETK ++++E
Sbjct: 457 GTFFFFAGWICLMTVFVYFFLPETKKLPMEQME 489
>10_08_0784 +
20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 735 GLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDRD 589
GL G + IYA + + ++ +PETK L+ I + F G D
Sbjct: 692 GLAGVFGIYAVVCILAFLFVFMKVPETKGMPLEVITEFFSVGAKQAKED 740
>09_04_0120 + 14836644-14836949,14837038-14837664,14837916-14838359
Length = 458
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEI 631
G +L +A +T V +FLPETK ++E+
Sbjct: 400 GIFLFFAGWITVMTVFVHVFLPETKGVPIEEM 431
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 518 IKNADHNFFFFSYFVSIKISAVFSSLSLVGGPPLNSSSISCRVLSLVSGKNIQLT 682
+ + D N Y +S SA S+V PPLN S++ ++ ++ +T
Sbjct: 101 LSSDDRNMIRMVYVISKLASACSQGKSIVDTPPLNESALGDEKEDKIASSSVAMT 155
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 726 GTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIE 628
G + +YA V ++ LPET+ R+L++++
Sbjct: 507 GCFFVYAGAAVAAWVFVYVRLPETRGRSLEDMD 539
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 759 TGIYAIL*GLHGTYLIYAA---IVTYCLVVSWIFLPETKDRTLQEIE 628
T ++ L L GT ++++A I LV + +PETK TL+EIE
Sbjct: 448 TFAFSPLEDLIGTGILFSAFGVIAVASLVFIFFIVPETKGLTLEEIE 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,599,302
Number of Sequences: 37544
Number of extensions: 284999
Number of successful extensions: 619
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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