Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f23
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical ...    34   0.099
AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical ...    34   0.099
Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    28   6.5  
Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical
           protein H17B01.1b protein.
          Length = 510

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 10/35 (28%), Positives = 25/35 (71%)
 Frame = -3

Query: 723 TYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF 619
           ++ I++  + + +  +W F+PETK +++++I+ EF
Sbjct: 472 SFFIFSGFLAFFIFYTWKFVPETKGKSIEQIQAEF 506


>AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical
           protein H17B01.1a protein.
          Length = 492

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 10/35 (28%), Positives = 25/35 (71%)
 Frame = -3

Query: 723 TYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEF 619
           ++ I++  + + +  +W F+PETK +++++I+ EF
Sbjct: 454 SFFIFSGFLAFFIFYTWKFVPETKGKSIEQIQAEF 488


>Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical
           protein M01F1.5 protein.
          Length = 604

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 729 HGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIE 628
           +GT+ IY       LV  + F+PETK  ++ E+E
Sbjct: 535 YGTFFIYCGCTMVALVFVFFFVPETKGYSIDEVE 568


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -3

Query: 735 GLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDRDENTAEILME 562
           G +G + +YA +     +     +PETK  +++E+E  F      R+ +    E + E
Sbjct: 529 GKYGAFWLYAGLTVIAFIFILFLVPETKGYSIEEVEMLFMNKKQRREAESRRRETVTE 586


>Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical
           protein T06E6.11 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 371 IFNTLVIFNYLNNVYT*TIAVFNMQYTINTSYLILIVLS*KHKVHNYVLIKNADHNF-FF 547
           +FN  ++F Y  NV    +   N + T+N  Y     LS +H  +  ++I +A      +
Sbjct: 137 LFNQYILFGYCRNVIDVPLECDNFKCTVNECY-YGFWLSFEHYSYVLIVILSATIVIRLY 195

Query: 548 FSYFVSIKISAVFSSLSLV 604
             Y    +++AVF+  +L+
Sbjct: 196 MCYLKGTQLNAVFARATLI 214


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 26  MRVCVKYMVC-SVCNIFFIDLMYLLYIILKRY*HCAFLLCILYKCGKF 166
           +R+CV  + C ++C++ +I   YL+ I    + +CA LL  + K   F
Sbjct: 52  LRLCVFLLACDALCSLCYI-FTYLINIFFSHFSNCASLLLEVIKMSTF 98


>Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical
           protein K09E9.1 protein.
          Length = 508

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 714 IYAAIVTYCLVVSWIFLPETKDRTLQEIEDE 622
           I+A ++   LVV  IFLP+  D+   E+ DE
Sbjct: 478 IFAVLLFIQLVVIVIFLPDDSDKDANEMNDE 508


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 356 IVLNVIFNTLVIFNYLNNVYT*TIAVFNMQYTINTSYL 469
           I L V F+  ++F Y  NV    +   N Q T+N  YL
Sbjct: 132 ISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYL 169


>Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical
           protein C37E2.3 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 344 TGIAIVLNVIFNTLVIFNY 400
           T +A VLNV+++TLV+  Y
Sbjct: 122 TNLAFVLNVVYSTLVVIGY 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,015,133
Number of Sequences: 27780
Number of extensions: 311005
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)