Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f19
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.5  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    27   3.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   10.0 
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   10.0 

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +1

Query: 673 FPGEFRGYLLLSDTEHEGIHIVFAELYADLQRVRVGPHHAQQHVER 810
           +P   R Y  LS+  H+ +HI  + +YA+   +++ P+  ++ +++
Sbjct: 429 YPFLLRAYPELSNLYHKLLHISISSIYANYSPLKLLPNDVRERLKQ 474


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 438 ERVMLVSLALGPDGGGDELRPLL 370
           ER+  ++LALGP+   DEL P L
Sbjct: 33  ERLSTIALALGPERTRDELIPFL 55


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 102 SFWEFFVSAGAFALLIPNDAVSLGRLLRVCVP 197
           S W F V  G+F LL+P  A ++   L V +P
Sbjct: 142 SSWSFSVKGGSFLLLLPL-AYNITLFLLVIIP 172


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 741 KDDMDPFVFCIAQKKIAAKLAREMHDL 661
           +DD+D +     + K+A KL +E HDL
Sbjct: 478 QDDLDYYESLDKKSKMAKKLRKENHDL 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,526
Number of Sequences: 5004
Number of extensions: 25743
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)