Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f19
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0213 + 15706638-15707915                                         29   6.0  
06_01_0181 - 1404688-1404792,1405504-1405608                           28   7.9  

>09_04_0213 + 15706638-15707915
          Length = 425

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 75  FTAPSLSIVSFWEFFVSAGAFALL 146
           FT+ SLS  SFW  F+  GA +LL
Sbjct: 284 FTSDSLSFGSFWGLFLITGATSLL 307


>06_01_0181 - 1404688-1404792,1405504-1405608
          Length = 69

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 351 LDKLK-RFKLSKEALAKCEKRRQKVAEAW 268
           LD+L  R K  KEA   CEK ++K  E W
Sbjct: 29  LDQLDLRMKNLKEAKCACEKEKRKAEERW 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,789
Number of Sequences: 37544
Number of extensions: 209372
Number of successful extensions: 859
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)