Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f19
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-4|CAA84678.1|  442|Caenorhabditis elegans Hypothetical pr...   108   4e-24

>Z35604-4|CAA84678.1|  442|Caenorhabditis elegans Hypothetical
           protein ZK1058.4 protein.
          Length = 442

 Score =  108 bits (260), Expect = 4e-24
 Identities = 62/181 (34%), Positives = 104/181 (57%), Gaps = 3/181 (1%)
 Frame = -2

Query: 798 LLGVVRPNPDTLQIRIELGK-DDMDPFVFCIAQKKIAAKLAREMHDLSVYCGERR-AGER 625
           ++ +  P+ D + I+  L   +D DP +F + +KKIA+K  +EM DL+ +  ER+ A ++
Sbjct: 202 IMEMFTPSGDKMTIKASLETTNDTDPLIFAVGEKKIASKYFKEMLDLNSFASERKQAAQQ 261

Query: 624 LGVPGALSVVAECAEPGAALLDARVCAAXXXXXXXXXXXXLSDKYAGPKHLEETASTKPP 445
             +P +  V A+  E   ++LD  V +             +SD++ GPK  E  + T+ P
Sbjct: 262 FNLPASWQVYADQNEVVFSILDPGVVSLLKKHEDAIEFIHISDQFTGPKPAEGESYTRLP 321

Query: 444 ETERVMLVSLALGPDGGGDE-LRPLLQLVFYILDKLKRFKLSKEALAKCEKRRQKVAEAW 268
           E +R M VSL L   G  +E +  +L LVFY++DK ++ KLSK+A  K E+RR++  +A+
Sbjct: 322 EAQRYMFVSLNLQYLGQDEESVMEILNLVFYLIDKARKMKLSKDAKVKAERRRKEFEDAF 381

Query: 267 L 265
           L
Sbjct: 382 L 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,700,150
Number of Sequences: 27780
Number of extensions: 160606
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)