Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f18
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    30   0.38 
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    28   2.0  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   3.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.7  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   6.2  

>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -1

Query: 716 YLGVNCEGIVNLSVRNGTVDQGTRIVSVHPVGAP 615
           Y G + +G+++L VRN  + +G++++ +H  GAP
Sbjct: 294 YEGKSMQGLIHL-VRNNEIAEGSKVLYIHLGGAP 326


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -1

Query: 776 LEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGTRI 642
           L H+N DPA  +GAGA    Y+G + +   +LS    T+ QGT++
Sbjct: 220 LIHVNEDPACGSGAGA-VGVYIGSSQKTPTSLSF---TISQGTKL 260


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 721 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGGPPD 843
           HGP  + A       +    L  S +   LT GT++GG  D
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGGALD 460


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 619 APTGCTDTILVPWSTVPLRTLRFTIPSQFTP 711
           A T CT +  VP+++ P+ +  +TI S  TP
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSS-TP 580


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 506 VVAKNRTGKSNFITSIRETLKTHY 435
           +V +N +GKSNF  +IR  L   Y
Sbjct: 30  IVGRNGSGKSNFFAAIRFVLSDAY 53


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +1

Query: 628 GCTDTILVPWSTVPLRTLRFTIPSQFTPRY------GHGPAPAPAR 747
           G +D  +VPW        +F +P+ + PR+      G+  AP P +
Sbjct: 142 GMSDGSVVPWDVTRHCLGKFKVPNLYVPRHEEWRMMGYSYAPVPGK 187


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 507 FNYLSGFPFRQQVVSEQRSPGLVVGQLLLEVAAA 608
           FNY   +P  + ++ + R PG++    L E A+A
Sbjct: 474 FNYFREYPGSKDIMLDGRGPGMLEKMYLSEKASA 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,465
Number of Sequences: 5004
Number of extensions: 55672
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)