Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16f18
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794... 30 2.1
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 30 2.8
05_01_0129 - 872127-872681,872762-873070,873180-873347 29 3.7
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 29 4.9
04_04_1136 - 31142742-31142806,31143245-31143325,31143432-311435... 29 4.9
02_05_0426 - 28881671-28881753,28882130-28882621,28882802-288828... 29 4.9
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 29 4.9
01_03_0194 + 13645418-13645790,13645879-13647653 29 6.5
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 28 8.6
>12_02_0580 +
20776820-20777247,20777341-20778109,20779280-20779447,
20779877-20780236
Length = 574
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 530 LPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGA 634
LPSAG T SRRW + G + C +A+ LG+
Sbjct: 36 LPSAGDVARTTVLSRRWRHLCGIAPCLRFAVGLGS 70
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 640 CRCTQ*ERPRAAAATSSNSCP 578
CRC+ P AAA+ SS++CP
Sbjct: 22 CRCSSSSSPAAAASASSSACP 42
>05_01_0129 - 872127-872681,872762-873070,873180-873347
Length = 343
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -1
Query: 362 DFSRAPLCSDAAVDSWL--HYFELD 294
D S+A LC D VDSWL ++ELD
Sbjct: 262 DESQAVLCPDVEVDSWLGIDFYELD 286
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 748 SSPALEPDRGRTWA*TAR 695
S P LEPDRG TW T R
Sbjct: 236 SQPGLEPDRGLTWQMTKR 253
>04_04_1136 -
31142742-31142806,31143245-31143325,31143432-31143588,
31143695-31143809,31144016-31144083,31144171-31144314,
31144393-31144470,31144555-31144637,31144729-31144768,
31144993-31145067,31145202-31145314,31145839-31145878,
31145977-31146128,31146351-31146405,31146717-31146776,
31147005-31147268,31148379-31148436,31148606-31148637
Length = 559
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 677 VRNGTVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVI 510
+R QG + +V PV P+ S ++++LP D+ R G ++EGK V+
Sbjct: 149 IRRSLGSQGFTLPTVEPV--PESSVSKVEERLPEDKERWWKKGLKAISEGKLAVVL 202
>02_05_0426 -
28881671-28881753,28882130-28882621,28882802-28882864,
28883251-28883440,28883534-28883642,28883952-28884363,
28884967-28885196,28885294-28885403
Length = 562
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 528 PFRQQVVSEQRSPGLVVGQLLLEVAAAALGRSYWVHRHY 644
P Q+V++ + P VVG +AAA+ G S+ H Y
Sbjct: 166 PVETQLVAQSQPPSSVVGSAAAPLAAASNGSSFQNHSLY 204
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 748 SSPALEPDRGRTWA*TAR 695
S P LEPDRG TW T R
Sbjct: 243 SQPGLEPDRGLTWQMTKR 260
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = -1
Query: 827 YLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGT 648
Y+V V RDK Y+L LE ++ + AF A P +G+N I+ +V NG +
Sbjct: 71 YVVSYVGRDKYYNLFHGLECVD-NRAFCLLLWAALLPMVGMNTSSILT-AVHNGNEELPD 128
Query: 647 RIVS 636
I+S
Sbjct: 129 IIIS 132
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 572 ETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGA 405
E RT L G + E +PG+V+ V+ + +GKS ++ + L + V+ G A
Sbjct: 54 EERTILKG--ITGEARPGEVLAVLGPSGSGKSTLLSILGGRLAGRHAGTVLAGGRA 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,469,793
Number of Sequences: 37544
Number of extensions: 517098
Number of successful extensions: 2039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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