Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f18
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007110-1|AAH07110.2|  310|Homo sapiens C11orf54 protein protein.    177   4e-44
AL136605-1|CAB66540.1|  315|Homo sapiens hypothetical protein pr...   177   4e-44
CR533538-1|CAG38569.1|  315|Homo sapiens PTD012 protein.              175   2e-43
BC012298-1|AAH12298.1|  265|Homo sapiens chromosome 11 open read...    62   2e-09
AF079564-1|AAC28392.1|  353|Homo sapiens ubiquitin-specific prot...    31   4.2  
AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein.            31   5.5  
AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein.     31   5.5  

>BC007110-1|AAH07110.2|  310|Homo sapiens C11orf54 protein protein.
          Length = 310

 Score =  177 bits (431), Expect = 4e-44
 Identities = 100/260 (38%), Positives = 141/260 (54%), Gaps = 3/260 (1%)
 Frame = -1

Query: 839 GGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCE--GIVNLSVRNG 666
           GG PYL+P V + K+YDL K+ + +    AF+ GAGAGP+  LG N E   ++     + 
Sbjct: 58  GGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHK 117

Query: 665 TVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRT 486
               G+    V+P         Y ++     + + ALL N   +EG+PGKVI+V AK RT
Sbjct: 118 PPVNGSYFAHVNPADGGCLLEKYSEKC---HDFQCALLANLFASEGQPGKVIEVKAKRRT 174

Query: 485 GKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRGYFHVMP-DFSRAPLCSDAAVDSWLH 309
           G  NF+T +RETL+ HYG+K +G+GG F+++ G+   H+MP +FS  PL SD  V+ WLH
Sbjct: 175 GPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLH 234

Query: 308 YFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXXXXXXXXXXXXYDTTPEDVHYEGYFT 129
           ++E+ AP               LR++                   YDTTP+ V Y GYF 
Sbjct: 235 FYEMKAPLVCLPVFVSRDPGFDLRLE----HTHFFSRHGEGGHYHYDTTPDIVEYLGYFL 290

Query: 128 VASSLIRVDPPVETHTFGRD 69
            A  L R+D P ETH+ GRD
Sbjct: 291 PAEFLYRIDQPKETHSIGRD 310


>AL136605-1|CAB66540.1|  315|Homo sapiens hypothetical protein
           protein.
          Length = 315

 Score =  177 bits (431), Expect = 4e-44
 Identities = 100/260 (38%), Positives = 141/260 (54%), Gaps = 3/260 (1%)
 Frame = -1

Query: 839 GGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCE--GIVNLSVRNG 666
           GG PYL+P V + K+YDL K+ + +    AF+ GAGAGP+  LG N E   ++     + 
Sbjct: 63  GGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHK 122

Query: 665 TVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRT 486
               G+    V+P         Y ++     + + ALL N   +EG+PGKVI+V AK RT
Sbjct: 123 PPVNGSYFAHVNPADGGCLLEKYSEKC---HDFQCALLANLFASEGQPGKVIEVKAKRRT 179

Query: 485 GKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRGYFHVMP-DFSRAPLCSDAAVDSWLH 309
           G  NF+T +RETL+ HYG+K +G+GG F+++ G+   H+MP +FS  PL SD  V+ WLH
Sbjct: 180 GPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLH 239

Query: 308 YFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXXXXXXXXXXXXYDTTPEDVHYEGYFT 129
           ++E+ AP               LR++                   YDTTP+ V Y GYF 
Sbjct: 240 FYEMKAPLVCLPVFVSRDPGFDLRLE----HTHFFSRHGEGGHYHYDTTPDIVEYLGYFL 295

Query: 128 VASSLIRVDPPVETHTFGRD 69
            A  L R+D P ETH+ GRD
Sbjct: 296 PAEFLYRIDQPKETHSIGRD 315


>CR533538-1|CAG38569.1|  315|Homo sapiens PTD012 protein.
          Length = 315

 Score =  175 bits (425), Expect = 2e-43
 Identities = 99/260 (38%), Positives = 140/260 (53%), Gaps = 3/260 (1%)
 Frame = -1

Query: 839 GGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCE--GIVNLSVRNG 666
           GG PYL+P V + K+YDL K+ + +    AF+ GAGAGP+  LG N E   ++     + 
Sbjct: 63  GGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHK 122

Query: 665 TVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRT 486
               G+    V+P         Y ++     + + ALL N   +EG+PGKVI+V AK RT
Sbjct: 123 PPVNGSYFAHVNPADGGCLLEKYSEKC---HDFQCALLANLFASEGQPGKVIEVKAKRRT 179

Query: 485 GKSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRGYFHVMP-DFSRAPLCSDAAVDSWLH 309
           G  N +T +RETL+ HYG+K +G+GG F+++ G+   H+MP +FS  PL SD  V+ WLH
Sbjct: 180 GPLNLVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLH 239

Query: 308 YFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXXXXXXXXXXXXYDTTPEDVHYEGYFT 129
           ++E+ AP               LR++                   YDTTP+ V Y GYF 
Sbjct: 240 FYEMKAPLVCLPVFVSRDPGFDLRLE----HTHFFSRHGEGGHYHYDTTPDIVEYLGYFL 295

Query: 128 VASSLIRVDPPVETHTFGRD 69
            A  L R+D P ETH+ GRD
Sbjct: 296 PAEFLYRIDQPKETHSIGRD 315


>BC012298-1|AAH12298.1|  265|Homo sapiens chromosome 11 open reading
           frame 54 protein.
          Length = 265

 Score = 62.5 bits (145), Expect = 2e-09
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
 Frame = -1

Query: 839 GGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCE--GIVNLSVRNG 666
           GG PYL+P V + K+YDL K+ + +    AF+ GAGAGP+  LG N E   ++     + 
Sbjct: 63  GGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHK 122

Query: 665 TVDQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGK 516
               G+    V+P         Y ++     + + ALL N   +EG+PGK
Sbjct: 123 PPVNGSYFAHVNPADGGCLLEKYSEK---CHDFQCALLANLFASEGQPGK 169



 Score = 61.3 bits (142), Expect = 5e-09
 Identities = 35/98 (35%), Positives = 45/98 (45%)
 Frame = -1

Query: 362 DFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXXXXXXXXX 183
           +FS  PL SD  V+ WLH++E+ AP               LR++                
Sbjct: 172 EFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYHY 231

Query: 182 XXXYDTTPEDVHYEGYFTVASSLIRVDPPVETHTFGRD 69
               DTTP+ V Y GYF  A  L R+D P ETH+ GRD
Sbjct: 232 ----DTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD 265


>AF079564-1|AAC28392.1|  353|Homo sapiens ubiquitin-specific
           protease UBP41 protein.
          Length = 353

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 449 LKTHYGDKVVGLGGAFVLRAGRGYFHVMPDFSRAPLCSDAA--VDSWLHYFELDAP 288
           +  H G  + G   A+    G G +H   D S  P+ S      D++LH++EL +P
Sbjct: 294 VSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLHFYELASP 349


>AF231919-1|AAF72943.1| 2248|Homo sapiens C21orf108 protein.
          Length = 2248

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 404  FVLRAGRGYFHVMPDFSRAPLCSDAAVDSWL 312
            + L A RG FH++  F  +PLC +AA  +W+
Sbjct: 1779 YELCARRGIFHIILSFFHSPLCDEAA-QNWI 1808


>AB011111-1|BAA25465.2| 2046|Homo sapiens KIAA0539 protein protein.
          Length = 2046

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 404  FVLRAGRGYFHVMPDFSRAPLCSDAAVDSWL 312
            + L A RG FH++  F  +PLC +AA  +W+
Sbjct: 1577 YELCARRGIFHIILSFFHSPLCDEAA-QNWI 1606


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,445,160
Number of Sequences: 237096
Number of extensions: 2710476
Number of successful extensions: 9395
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9388
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)