Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f18
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...   141   7e-34
U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    30   2.5  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    30   2.5  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    30   2.5  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    30   2.5  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    30   2.5  
Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score =  141 bits (341), Expect = 7e-34
 Identities = 83/247 (33%), Positives = 124/247 (50%), Gaps = 1/247 (0%)
 Frame = -1

Query: 839 GGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTV 660
           GGP  L P    D  +D+ K+ +      A + G GAGPWP +G NCE + +++++ G V
Sbjct: 45  GGPGNLYPGFHIDHQFDIPKIGKVCEHPEAAVFGPGAGPWPIVGQNCEMVADVNLKTGEV 104

Query: 659 DQGTRIVSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEG-KPGKVIKVVAKNRTG 483
             GTRI  ++          Y+Q+ +  DE + +L+ N  L++  K   V+   A  R G
Sbjct: 105 --GTRIAEINS----NSDKRYVQRII--DEPKFSLMANLALSDADKSSTVVHFKASVRKG 156

Query: 482 KSNFITSIRETLKTHYGDKVVGLGGAFVLRAGRGYFHVMPDFSRAPLCSDAAVDSWLHYF 303
           + N    IR+ L+ H+G K+V L G F+++ G+   HVMPDF   P  ++A VD WL+YF
Sbjct: 157 EKNLTNCIRDGLQEHFGKKIVSLAGQFIIQTGKARLHVMPDFPGCPFENNAEVDKWLNYF 216

Query: 302 ELDAPXXXXXXXXXXXXXXXLRVQXXXXXXXXXXXXXXXXXXXYDTTPEDVHYEGYFTVA 123
           E+ AP               LR++                   YD TPE V YEG+F  A
Sbjct: 217 EMSAPLICATVMHSYDPGHNLRLE----HTHCYSDHGDAGHYHYDVTPETVSYEGWFAPA 272

Query: 122 SSLIRVD 102
           S + R+D
Sbjct: 273 SKIYRID 279


>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 515 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 694
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 213 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 267

Query: 695 PRSSRPGTATV 727
           P SSRP   +V
Sbjct: 268 PSSSRPSICSV 278


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 515 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 694
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 288 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 342

Query: 695 PRSSRPGTATV 727
           P SSRP   +V
Sbjct: 343 PSSSRPSICSV 353


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 515 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 694
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 222 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 276

Query: 695 PRSSRPGTATV 727
           P SSRP   +V
Sbjct: 277 PSSSRPSICSV 287


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 515 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 694
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 366 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 420

Query: 695 PRSSRPGTATV 727
           P SSRP   +V
Sbjct: 421 PSSSRPSICSV 431


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 515 PFRVSLPSAGSFRATQSWSRRWAAVAGGSRCCPWALLLGAPTLFWYLGQQYRCGH*GLLY 694
           P  +++PS  S + T   + +WA+   G    P   + G PT     G +   GH G+ +
Sbjct: 213 PQPMTMPSTSSCQMT---TPKWASP--GVCNSPGLQMNGGPTSPLPNGTRRNTGHGGIEF 267

Query: 695 PRSSRPGTATV 727
           P SSRP   +V
Sbjct: 268 PSSSRPSICSV 278


>Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical
           protein C08F8.3 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 641 VSVHPVGAPKGSSGYLQQQLPNDETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSN 474
           VS  PV AP  S    QQQ P    +TA +GN+L  +   G ++ V   + T + +
Sbjct: 308 VSKAPVVAPS-SQLQQQQQQPCSSNQTARIGNFLERDQVRGNLLGVPLSSSTPRGS 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,445
Number of Sequences: 27780
Number of extensions: 360695
Number of successful extensions: 1027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)