Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f18
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.92 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 716 YLGVNCEGIVNLSVRNGT 663
           YLG+ C+G+ ++  RN T
Sbjct: 9   YLGITCQGVTDIHSRNLT 26


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 860 TPXXSRSGGPPYLVPQVKRDKIYDLAKLLEHLNRD 756
           +P  SRS  P  L  Q  +D   + +K   H N+D
Sbjct: 37  SPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQD 71


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 535 RKGNPER*LKWSRRTARASPTLSRP 461
           +K N E  LK    T  ASPTLS P
Sbjct: 11  KKNNVEN-LKGGGSTTPASPTLSTP 34


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 623 LLGAPTLFWYLGQQ 664
           L+  PT+FW+L +Q
Sbjct: 328 LITLPTIFWFLTRQ 341


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 713 LGVNCEGIVNLSVRNGT 663
           LG+ C+GI +++VR  +
Sbjct: 11  LGIACQGITSVTVRENS 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,968
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)