Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f17
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   1.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   2.4  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   5.6  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   7.5  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   7.5  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   7.5  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   7.5  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 361 LKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGHI 474
           LK  ++E F+N++  +  +  V   HN+   TI +G++
Sbjct: 572 LKCLQEEEFDNKVLLEQVESNVQTDHNSPCNTIYVGNL 609


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 355  TILKEEEDEAFNNEISYDDT----DDIVTKQHNAAVRTIAIGHIVDKVYFCCRFF 507
            T   + E+EA + ++   +T    D++  +++N  +  +AIGH++D   F  R F
Sbjct: 969  TSFGDVEEEALSIQLLQKETMLRIDELEIERNNTLLERLAIGHVLDDSVFRNRDF 1023


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 198 TVCKLTQLKINWNSGFSKYCYGFFAAAVCMF 290
           T+   T  ++ WN  F  +C  FF + V ++
Sbjct: 120 TILSSTDYQLEWNYCFDVHCNSFFPSFVLLY 150


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 487 YFCCRFFYNSNKFLKY 534
           YFC ++F N N FL Y
Sbjct: 116 YFCLQYFTNLNSFLYY 131


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 194 RYCMQTNTIEN*LEFWVQQILLRV 265
           +Y +QTN     ++FW  QILL +
Sbjct: 539 KYLLQTNKARENIKFWRPQILLLI 562


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 174 DVNHKNHHQISIFELGNNSFTL 109
           D NHKN+H + + +L N   T+
Sbjct: 660 DTNHKNNHPLKMTDLSNEVETM 681


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 334 QTLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGHIV 477
           ++L  LPT   ++ED  F   +  +DT D+  K     ++ IAIG  V
Sbjct: 31  KSLNTLPT--PKQEDVEFGVPLQPEDTQDLQRKLKPRHMQMIAIGGCV 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,235
Number of Sequences: 5004
Number of extensions: 52018
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)