Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f17
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-8|AAD31049.1|  221|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF024498-2|AAF39804.2|  318|Caenorhabditis elegans Serpentine re...    28   7.1  
AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine re...    28   7.1  

>U41534-8|AAD31049.1|  221|Caenorhabditis elegans Hypothetical
           protein C16A3.2 protein.
          Length = 221

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 427 TKQHNAAVRTIAIGHIVDKVYFCCRFFYNSNKFLKY*FSLNITDVPTNARRF-----SGQ 591
           TK HN + R I+   I+  +Y   R    +++ LK     NIT V   + R      + Q
Sbjct: 34  TKLHNLSSRKIS--EILPNLYLSGRTVSQNSELLK---EKNITTVINVSDREVVNYKNNQ 88

Query: 592 KFIKQYTLKSIEETASA 642
           KFIK Y   ++ +TASA
Sbjct: 89  KFIKNYRFYAMSDTASA 105


>AF024498-2|AAF39804.2|  318|Caenorhabditis elegans Serpentine
           receptor, class x protein101 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 229 IGILGSANTVTGFLLLLSVCLNYVTYIVF*IKLFLQTLTQLPTILKEEEDEAFNNE 396
           I I+G+ N  T   +L++  +NY  YIV  I  F+ ++ +L  I+  ++    NN+
Sbjct: 85  ITIIGNFNGPTLMNILVNQMVNYGIYIVGPIVQFMISINRLMVIIFVKQSMTQNNQ 140


>AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine
           receptor, class w protein2 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 237 SGFSKYCYGFFAAAVCMFKLCYLHSILNKIISPDTNSASNNF 362
           +GFS + +GFF  +  +    YL  +  +I  P TNS+++ F
Sbjct: 289 NGFSHFAFGFFTTSPLIKTASYLIMVFAEIF-PVTNSSTHLF 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,783
Number of Sequences: 27780
Number of extensions: 280310
Number of successful extensions: 786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)