Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16f14
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical pr... 87 9e-18
U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein. 87 9e-18
L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage stimul... 87 9e-18
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 31 0.87
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 31 0.87
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 31 0.87
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 31 0.87
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 31 0.87
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr... 31 0.87
U64842-1|AAB37083.2| 710|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho... 29 3.5
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho... 29 3.5
Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF100661-4|AAC68973.1| 481|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z68315-7|CAA92672.1| 735|Caenorhabditis elegans Hypothetical
protein F28C6.6 protein.
Length = 735
Score = 87.0 bits (206), Expect = 9e-18
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = -1
Query: 370 QRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNF 191
+R +E N +DVD+W+LL+RE Q+R I+ R YE L+ FP +GRYWK YIE E++++NF
Sbjct: 10 ERRIETNPFDVDAWNLLLREHQSRPIDQERDFYESLVKQFPNSGRYWKAYIEHELRSKNF 69
Query: 190 ERVEKV 173
E VEK+
Sbjct: 70 ENVEKL 75
>U23830-1|AAB01508.1| 730|Caenorhabditis elegans suf-1 protein.
Length = 730
Score = 87.0 bits (206), Expect = 9e-18
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = -1
Query: 370 QRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNF 191
+R +E N +DVD+W+LL+RE Q+R I+ R YE L+ FP +GRYWK YIE E++++NF
Sbjct: 5 ERRIETNPFDVDAWNLLLREHQSRPIDQERDFYESLVKQFPNSGRYWKAYIEHELRSKNF 64
Query: 190 ERVEKV 173
E VEK+
Sbjct: 65 ENVEKL 70
>L39893-1|AAA62311.1| 735|Caenorhabditis elegans cleavage
stimulation factor protein.
Length = 735
Score = 87.0 bits (206), Expect = 9e-18
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = -1
Query: 370 QRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNF 191
+R +E N +DVD+W+LL+RE Q+R I+ R YE L+ FP +GRYWK YIE E++++NF
Sbjct: 10 ERRIETNPFDVDAWNLLLREHQSRPIDQERDFYESLVKQFPNSGRYWKAYIEHELRSKNF 69
Query: 190 ERVEKV 173
E VEK+
Sbjct: 70 ENVEKL 75
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 TARWARDRRSLPQSMS-AISSTDAILKFTFEVIY 458
TARW R+ R LP+S ++D + KFT + ++
Sbjct: 5034 TARWLRNGRELPESSRYRFEASDGVYKFTIKEVW 5067
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 TARWARDRRSLPQSMS-AISSTDAILKFTFEVIY 458
TARW R+ R LP+S ++D + KFT + ++
Sbjct: 5563 TARWLRNGRELPESSRYRFEASDGVYKFTIKEVW 5596
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 TARWARDRRSLPQSMS-AISSTDAILKFTFEVIY 458
TARW R+ R LP+S ++D + KFT + ++
Sbjct: 5244 TARWLRNGRELPESSRYRFEASDGVYKFTIKEVW 5277
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 TARWARDRRSLPQSMS-AISSTDAILKFTFEVIY 458
TARW R+ R LP+S ++D + KFT + ++
Sbjct: 5034 TARWLRNGRELPESSRYRFEASDGVYKFTIKEVW 5067
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 TARWARDRRSLPQSMS-AISSTDAILKFTFEVIY 458
TARW R+ R LP+S ++D + KFT + ++
Sbjct: 5563 TARWLRNGRELPESSRYRFEASDGVYKFTIKEVW 5596
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 TARWARDRRSLPQSMS-AISSTDAILKFTFEVIY 458
TARW R+ R LP+S ++D + KFT + ++
Sbjct: 5244 TARWLRNGRELPESSRYRFEASDGVYKFTIKEVW 5277
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 TARWARDRRSLPQSMS-AISSTDAILKFTFEVIY 458
TARW R+ R LP+S ++D + KFT + ++
Sbjct: 4453 TARWLRNGRELPESSRYRFEASDGVYKFTIKEVW 4486
>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
C16A3.3 protein.
Length = 1743
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 283 RTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 173
RT+ E L+TA P W +Y E +K E KV
Sbjct: 1650 RTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKV 1686
>U64842-1|AAB37083.2| 710|Caenorhabditis elegans Hypothetical
protein F25B4.5 protein.
Length = 710
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -1
Query: 430 MASVDEIADIDWGNERLSRAQRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITA 254
+A VD+ D+D+ E+ R+ + N Y W E + NI + + ++EK I +
Sbjct: 106 LAKVDQSDDVDFAREKY-RSFLSRYPNCYGF--WQKYAEYEKKMGNIAEAKAVWEKGIIS 162
Query: 253 FPTTGRYWKIYIEQEMKARNF 191
P + W Y +NF
Sbjct: 163 IPLSIDLWLGYTADVKNIKNF 183
>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoformb protein.
Length = 1420
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 319 VREAQARNINDVRTMYEKLITAFPTTGRYWKI 224
+R+A+ R ++DV YE L+ FP WK+
Sbjct: 303 LRDARKR-VSDVLDKYETLVDLFPNQNALWKV 333
>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
homolog protein 1, isoforma protein.
Length = 1418
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 319 VREAQARNINDVRTMYEKLITAFPTTGRYWKI 224
+R+A+ R ++DV YE L+ FP WK+
Sbjct: 303 LRDARKR-VSDVLDKYETLVDLFPNQNALWKV 333
>Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical
protein F40D4.5 protein.
Length = 310
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 613 RLSLVELFNFLKKIVFFYCFKSILTLRVMCPQTISTSFT*FFEKL 479
RL F + VFF CF++++ L ++ I FT F+ K+
Sbjct: 74 RLKRNVCFPAISIYVFFICFQAVMILMLVIDLLIIVFFTTFYRKI 118
>Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical
protein F20E11.2 protein.
Length = 310
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 613 RLSLVELFNFLKKIVFFYCFKSILTLRVMCPQTISTSFT*FFEKL 479
RL F + VFF CF++++ L ++ I FT F+ K+
Sbjct: 74 RLKRNVCFPAISIYVFFICFQAVIILMLVVDLLIIVFFTTFYRKI 118
>AF100661-4|AAC68973.1| 481|Caenorhabditis elegans Hypothetical
protein H20E11.1a protein.
Length = 481
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +3
Query: 432 LKFTFEVIYLVLSPSNSFSKN*-------VNEVLIVCGHITLSVKIDLKQ*KNTIFFKKL 590
L F Y + P N+F+K VN+V+IV + L+ KI+ N IF+
Sbjct: 52 LSANFNCSYTIKPPKNTFAKITLLNQLVGVNDVIIVTDGLQLTTKINRNYPNNVIFYVFP 111
Query: 591 NNST 602
ST
Sbjct: 112 QTST 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,781
Number of Sequences: 27780
Number of extensions: 319972
Number of successful extensions: 971
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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