Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f12
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    27   2.6  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.5  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 438 SSNNYPNAVAVIFIYWLNTFIFNEYDTLLKLFCNKKNGIRYLW 310
           +SN  PNA++ +    L+  + N   T L L+ + +NGI YLW
Sbjct: 159 ASNLPPNALSPLEAEMLSEILENP--TWLSLYLSIRNGICYLW 199


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +2

Query: 215 LKKSHLIIINNMIS----QNLSLSISQFFFCFIVKTHRYRIPFFLLQKSF 352
           LKKSH +++  +IS    + + L  +  F C+I+     +IP + LQ+ F
Sbjct: 457 LKKSHAVLLTFLISALVHEFVMLLATGKFRCYILTFQLLQIPLYDLQQMF 506


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 447 FFFSSNNYPNAVAVIFIYWLNTFI 376
           +F+S  N+P +   IFIY +++FI
Sbjct: 123 YFYSLPNFPYSKTCIFIYTVSSFI 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,263
Number of Sequences: 5004
Number of extensions: 68750
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)