Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f12
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 321 EYHFFYYKKVLIRYHI 368
           E++FF +K+VL RY++
Sbjct: 256 EFYFFLHKQVLNRYYL 271


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 321 EYHFFYYKKVLIRYHI 368
           E++FF +K+VL RY++
Sbjct: 256 EFYFFLHKQVLNRYYL 271


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 552 YNTKFYYVSTYIDNKILRHAPF 617
           Y   F  V T IDN+I    PF
Sbjct: 225 YEETFSLVFTKIDNEIFNRVPF 246


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 784 YSVQNCYIHIISNSYTS 734
           Y + NC IHI S S+ S
Sbjct: 168 YDILNCTIHIASWSHGS 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,392
Number of Sequences: 438
Number of extensions: 5149
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)