Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16f06
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 272 5e-74
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 272 5e-74
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 272 5e-74
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 87 4e-18
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 49 7e-07
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.007
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 4.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 7.6
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 272 bits (666), Expect = 5e-74
Identities = 122/165 (73%), Positives = 143/165 (86%)
Frame = -3
Query: 750 LLSLPPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 571
+++ PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G
Sbjct: 275 IVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMG 334
Query: 570 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 391
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E +PK +KS
Sbjct: 335 CASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKS 394
Query: 390 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
GDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 395 GDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -1
Query: 836 PLQXVYKIGGIGTVPVGQ 783
PLQ VYKIGGIGTVPVG+
Sbjct: 247 PLQDVYKIGGIGTVPVGR 264
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -2
Query: 793 PSGRVETGVLKPGTIVVFAP 734
P GRVETGV+KPG IV FAP
Sbjct: 261 PVGRVETGVIKPGMIVTFAP 280
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 272 bits (666), Expect = 5e-74
Identities = 122/165 (73%), Positives = 143/165 (86%)
Frame = -3
Query: 750 LLSLPPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 571
+++ PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G
Sbjct: 275 IVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMG 334
Query: 570 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 391
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E +PK +KS
Sbjct: 335 CASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKS 394
Query: 390 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
GDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 395 GDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -1
Query: 836 PLQXVYKIGGIGTVPVGQ 783
PLQ VYKIGGIGTVPVG+
Sbjct: 247 PLQDVYKIGGIGTVPVGR 264
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -2
Query: 793 PSGRVETGVLKPGTIVVFAP 734
P GRVETGV+KPG IV FAP
Sbjct: 261 PVGRVETGVIKPGMIVTFAP 280
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 272 bits (666), Expect = 5e-74
Identities = 122/165 (73%), Positives = 143/165 (86%)
Frame = -3
Query: 750 LLSLPPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 571
+++ PA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G
Sbjct: 275 IVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMG 334
Query: 570 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 391
A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E +PK +KS
Sbjct: 335 CASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKS 394
Query: 390 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
GDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 395 GDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -1
Query: 836 PLQXVYKIGGIGTVPVGQ 783
PLQ VYKIGGIGTVPVG+
Sbjct: 247 PLQDVYKIGGIGTVPVGR 264
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -2
Query: 793 PSGRVETGVLKPGTIVVFAP 734
P GRVETGV+KPG IV FAP
Sbjct: 261 PVGRVETGVIKPGMIVTFAP 280
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 86.6 bits (205), Expect = 4e-18
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Frame = -3
Query: 735 PANITTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 559
P N T EV ++ + E + ++ GD V V+ +++ GYV +KN P F
Sbjct: 503 PINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRF 560
Query: 558 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 379
AQ+ +L P ++ GY+ V+ HTA FA++ K+D+ T + ++ P G
Sbjct: 561 IAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKI 619
Query: 378 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 253
I L P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 620 IAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 49.2 bits (112), Expect = 7e-07
Identities = 41/138 (29%), Positives = 63/138 (45%)
Frame = -3
Query: 675 AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVL 496
AV GD V + ++ V +LR G + + +N P + F A++ + G I +G T VL
Sbjct: 461 AVAGDTVTLQLADIEVNQLRPGDILSNYEN-PVRRVRSFVAEIQTFDIHGPILSGSTLVL 519
Query: 495 DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 316
H+ + K+ K + + S K I L PLC+ +E P L
Sbjct: 520 -----HLGRTVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECPAL 571
Query: 315 GRFAVRDMRQTVAVGVIK 262
GRF +R TVA G++K
Sbjct: 572 GRFILRRSGDTVAAGIVK 589
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.9 bits (79), Expect = 0.007
Identities = 33/156 (21%), Positives = 65/156 (41%)
Frame = -3
Query: 732 ANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTA 553
+++ T V +EM + L AV GDN G ++++ ++L+RG + P F A
Sbjct: 292 SHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAPH--QKFKA 349
Query: 552 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIV 373
+L + T +D + + + +++ ++ T + K + GD +
Sbjct: 350 SFYILTK--EEGGRRTGFVDKYRPQLYSRTSDVTVEL---THPDPNDSDKMVMPGDNVEM 404
Query: 372 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 265
P+ +E Q RF VR+ TV ++
Sbjct: 405 ICTLIHPIVIEKGQ------RFTVREGGSTVGTALV 434
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 619 QFLDGHVLYVETYIVSRYSFLESFV 693
+F DGH+L ETY+ LES V
Sbjct: 527 KFFDGHLLASETYVGGHVESLESGV 551
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.6
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 212 SAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTKLTMAA 385
S +VTLPPPAS ++ T T T + S ++ G+ + +++ + ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241
Query: 386 SPDLMDFGLTSVDLPVRRSTFSLIS 460
S L +TS PV S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,748
Number of Sequences: 5004
Number of extensions: 75724
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -