Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f03
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    32   0.086
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.9  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   4.3  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   5.7  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   9.9  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 32.3 bits (70), Expect = 0.086
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +3

Query: 456 LVSVATVQRR-RKISTRKLLTQQPIQCGFYE-SSNLDNVHEQASLKHRKIERFYIHLEST 629
           LV+ A  Q+R R+++  KLL +QP+  G  E S  ++++      K+ K+  + I  E T
Sbjct: 60  LVNPAIFQKRARQLALSKLLLRQPLYPGIPEISEEIESIISHFMQKYIKVWSYQIIPEPT 119

Query: 630 *RNTIEN 650
             N+IE+
Sbjct: 120 ISNSIES 126


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 200  LERPGTELHRPDRP---ISLFEGVIGRLYLVEELAHAMD 93
            LER GT++  PDR     SL   VI R  +  EL   +D
Sbjct: 1988 LERVGTDIQEPDRQGVMFSLVRAVIARKIMTPELYKIID 2026


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 419 PLCILAYQVFEDEKYLKIALHCGEVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQAT 252
           P C+    + ED+++ K  +HC +       C++ + L  G   + Y  I  +  T
Sbjct: 151 PFCLDHSYILEDQQHNKCLVHCNQSRKDLLGCSQLFLLLKGSFTHEYLTIDFYNGT 206


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 431 PGFVPLCILAYQVFEDE 381
           PGF PLCIL Y + ED+
Sbjct: 585 PGF-PLCILEYGIVEDQ 600


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/49 (24%), Positives = 18/49 (36%)
 Frame = -2

Query: 342 MATWTLYKRLQSLSWSQWKCLRXXXXXXXXXXXXXXVPGVLFHGVVCIR 196
           +  WT  K    L W+QW CL                  +   GV+C++
Sbjct: 111 LQNWTPEKNRYGLIWNQW-CLSHLTDEDLIAYLSRCCEAIQEKGVICVK 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,212
Number of Sequences: 5004
Number of extensions: 80674
Number of successful extensions: 220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)