Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16f03
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0591 + 26472390-26472578,26472666-26472865,26472969-264730... 137 9e-33
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 135 5e-32
11_03_0207 + 11675204-11676542,11676829-11676962,11677171-116774... 33 0.37
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 32 0.64
12_01_0333 + 2570807-2571061,2571186-2571397,2571961-2572225,257... 29 4.5
06_01_0651 + 4711369-4712431,4713069-4713763 29 4.5
12_01_0150 + 1155658-1156087,1156319-1156383,1156506-1156569,115... 29 6.0
03_06_0773 + 36167986-36168148,36168325-36168714,36168790-361689... 29 6.0
08_01_0471 - 4147170-4149207,4150535-4150692 28 7.9
>04_04_0591 +
26472390-26472578,26472666-26472865,26472969-26473080,
26475517-26475633,26475752-26476063,26476172-26476510
Length = 422
Score = 137 bits (332), Expect = 9e-33
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
Frame = -3
Query: 542 IKPTLDWLLSQQFPSGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEKYLKIA 363
+K TL +++ +FPSGN+P + + D+ V WCHGAPG A QVF +E++L+
Sbjct: 263 VKGTLRYMIQNRFPSGNYPVTEEDKH-DRFVHWCHGAPGISLTLAKASQVFPEERFLEAI 321
Query: 362 LHCGEVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQATKKALHLYRA---CCFMEWCALER 192
EV+W RGL K +CHGVSGNAY F+ LF+ TKK HLYRA CF+ A +
Sbjct: 322 AEAAEVVWNRGL-LKRVGICHGVSGNAYTFLALFRLTKKKEHLYRAKAFACFLLDRAKQL 380
Query: 191 PGTE-LHRPDRPISLFEGVIGRLYLVEELAHAMDARFPALSI 69
+H D P SLFEG +G YL ++ + +D+RFP +
Sbjct: 381 IADGIMHSGDEPYSLFEGQVGMAYLFLDMINPLDSRFPGYEL 422
>10_08_0514 + 18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 135 bits (326), Expect = 5e-32
Identities = 67/162 (41%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Frame = -3
Query: 542 IKPTLDWLLSQQFPSGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEKYLKIA 363
+K TL +++ ++P+GN+PSS S D+LV WCHGAPG AYQVF DE + + A
Sbjct: 627 VKNTLLYMIRNRYPTGNYPSS-EGSESDRLVHWCHGAPGVALTLAKAYQVFHDEHFKQTA 685
Query: 362 LHCGEVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQATKKALHLYR----ACCFMEWCALE 195
EV+W RGL K +CHGVSGNAY F+ L++ T +LYR AC +E
Sbjct: 686 AEAAEVVWNRGL-LKRVGICHGVSGNAYVFLSLYRLTGNVEYLYRAKAFACFLLEKADQL 744
Query: 194 RPGTELHRPDRPISLFEGVIGRLYLVEELAHAMDARFPALSI 69
+H D P SLFEG G YL+ ++ +++FPA +
Sbjct: 745 IADGAMHGGDHPFSLFEGRAGMAYLLLDMVSPSESKFPAYEL 786
>11_03_0207 +
11675204-11676542,11676829-11676962,11677171-11677411,
11677508-11677719,11677837-11677883,11677988-11678090,
11678594-11678830
Length = 770
Score = 32.7 bits (71), Expect = 0.37
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 524 WLLSQQFPSGNFPSSLNSSNGDKLVQWC 441
+L+ + PSG FPS L+ S+ +K + WC
Sbjct: 555 FLVYEYVPSGTFPSYLSGSSPEKTLNWC 582
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 632 LSTFQMNIKSFNFSMFKARLFVNIVEIRRFIKPTLDWLLSQQFPSGNFPSSLNSSNGD 459
+ F N+ + +++ LFV EI + I P DWL++ PS P ++ S D
Sbjct: 466 VGAFLKNVTTVLSDLWRILLFVAQNEINKKIFPPEDWLIASSVPSKFSPDAIQSILND 523
>12_01_0333 +
2570807-2571061,2571186-2571397,2571961-2572225,
2572542-2572841
Length = 343
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 563 IVEIRRFIKPTLDWLLSQQFPSGNFPSSLNSSNGDKLVQ 447
+VE++R+I L W+ +FP G L DK+++
Sbjct: 297 LVELQRYIAQRLPWIQYHEFPEGGHMFMLVDGWTDKIIR 335
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 20 CILVSSPFLR*SPVSTRLIMLETWRP*HEQVLPPNINGQLHLRKERWV 163
C +V+SP L S VSTR + WRP V+ + G L + + WV
Sbjct: 469 CTVVASPELLASGVSTRTFLGRPWRPYARAVVMDSYLGPL-VDRAGWV 515
>12_01_0150 +
1155658-1156087,1156319-1156383,1156506-1156569,
1156988-1157115
Length = 228
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 623 KYLKKHDRKRRYCILFPRLSWKQ*AQQQK*MTLVTTLMGSQYSLPTISEPRNAM 784
K +KK +K R+CI P LS + +Q Q + T + +S PT P + +
Sbjct: 22 KEIKKRTKKARHCISLPLLSSEHKSQTQMEAAVATPSL--LFSSPTPRRPSSCL 73
>03_06_0773 +
36167986-36168148,36168325-36168714,36168790-36168965,
36169953-36170071,36170156-36170441
Length = 377
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 461 LRCYCSKTTENFHSETVDSTTNPV-WV 538
+RC + TT+NF ET+ +T P WV
Sbjct: 116 IRCIGASTTDNFPEETIQNTLVPTDWV 142
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 495 STRKLLTQQPIQCGFYESSNLDNVHEQASLKHRKIERFY 611
S R +L + +CG+ +S L+ + H +RFY
Sbjct: 440 SERSMLVKLKTECGYQFTSKLEGMFNDLKTSHDTTQRFY 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,594,416
Number of Sequences: 37544
Number of extensions: 487954
Number of successful extensions: 1222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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