Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16f03
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68880-4|CAA93093.1|  544|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical ...    29   5.4  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p...    28   7.1  
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini...    28   7.1  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AC006774-8|AAY43992.1|  295|Caenorhabditis elegans Hypothetical ...    28   9.4  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    28   9.4  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    28   9.4  

>Z68880-4|CAA93093.1|  544|Caenorhabditis elegans Hypothetical
           protein T14G10.7 protein.
          Length = 544

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 646 KTSLLHTVSKAF--LETISPTTKIDDAGNDAYGLTI 747
           +TSL H     F  LET+ P   +DD G D++G+ +
Sbjct: 339 QTSLQHGAVLRFVVLETVEPVIVLDDTGEDSHGVAV 374


>AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical
           protein Y19D10A.7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +2

Query: 350 LHNAKRFLNIFHLQIPDRL---ICITARNQEPHDTTGPTCLRCYCSKTTENFHSETVDST 520
           ++N   F N+  +QI   L    CIT +  +   TT    L C   K  EN  +   DS 
Sbjct: 175 IYNPNAFTNVIKIQIEANLHEDFCITTQEMQTFITTEFASLNCRPCKICENNVNMCNDSL 234

Query: 521 TN 526
            N
Sbjct: 235 EN 236


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +2

Query: 350 LHNAKRFLNIFHLQIPDRL---ICITARNQEPHDTTGPTCLRCYCSKTTENFHSETVDST 520
           ++N   F N+  +QI   L    CIT +  +   TT    L C   K  EN  +   DS 
Sbjct: 220 IYNPNAFTNVIKIQIEANLHEDFCITTQEMQTFITTEFASLNCRPCKICENNVNMCNDSL 279

Query: 521 TN 526
            N
Sbjct: 280 EN 281


>Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical
           protein F56H6.13 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 361 CIVERLYG---NVDSVQKVTVFVMESVEMPTLSFNC 263
           C+VER+Y    N+ + + +T  +ME+   P LS+NC
Sbjct: 157 CVVERIYNGLWNIQNDRNMTFILMEAHAAP-LSWNC 191


>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical protein
            C04H5.6 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 450  DQLVSVAT-VQRRRKISTRKLLTQQPIQCG-FYESSNLDNVHEQASLKHR 593
            DQLV +   V+   K ST  +  ++ I  G FY  S LDN     ++KH+
Sbjct: 882  DQLVGLLERVEIETKSSTDTIKIRKAITAGYFYNVSKLDNTGHYKTVKHK 931


>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
            protein C04H5.6 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 450  DQLVSVAT-VQRRRKISTRKLLTQQPIQCG-FYESSNLDNVHEQASLKHR 593
            DQLV +   V+   K ST  +  ++ I  G FY  S LDN     ++KH+
Sbjct: 882  DQLVGLLERVEIETKSSTDTIKIRKAITAGYFYNVSKLDNTGHYKTVKHK 931


>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
            protein MOG-4 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 450  DQLVSVAT-VQRRRKISTRKLLTQQPIQCG-FYESSNLDNVHEQASLKHR 593
            DQLV +   V+   K ST  +  ++ I  G FY  S LDN     ++KH+
Sbjct: 882  DQLVGLLERVEIETKSSTDTIKIRKAITAGYFYNVSKLDNTGHYKTVKHK 931


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 325 QSPRCHITSPQCKAIFKYFSSSN 393
           QSP+C+ T+PQ K++   F +SN
Sbjct: 22  QSPQCNQTTPQIKSMKPNFGASN 44


>AC006774-8|AAY43992.1|  295|Caenorhabditis elegans Hypothetical
           protein Y46H3A.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = -1

Query: 358 IVERLYGNVDSVQKVTVFVM-ESVEMPTL-------SFNCFKPLRKHFICTGRVVSWSGV 203
           I  ++YG++  V KV V V  E    P L       SF+CF  + KHF     +V    V
Sbjct: 42  IRHQVYGDLKKVDKVVVSVRTEDKAQPVLVNRNVSTSFHCFNHISKHFADDAVLVE---V 98

Query: 202 H*SDPGPNYIDLTDP 158
           H S  G  +  +  P
Sbjct: 99  HPSVGGAYFSSVNQP 113


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -3

Query: 557 EIRRFIKPTLDWLLSQQFPSGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEK 378
           EI +F+   LD L ++ FP      S N S      QW    P + P  + + Q F +++
Sbjct: 140 EIDQFLDELLDILNAEYFPKNYALPSKNPSFDTLYKQWKSFFPDWKPDELDSIQRFLEDR 199

Query: 377 YLKIALH 357
           Y  +  H
Sbjct: 200 YSHLPPH 206


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -3

Query: 557 EIRRFIKPTLDWLLSQQFPSGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEK 378
           EI +F+   LD L ++ FP      S N S      QW    P + P  + + Q F +++
Sbjct: 174 EIDQFLDELLDILNAEYFPKNYALPSKNPSFDTLYKQWKSFFPDWKPDELDSIQRFLEDR 233

Query: 377 YLKIALH 357
           Y  +  H
Sbjct: 234 YSHLPPH 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,039,591
Number of Sequences: 27780
Number of extensions: 451156
Number of successful extensions: 1228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)