Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e23
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.2  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   6.5  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   8.6  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    25   8.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 480  GSAASSTPLAMPQ-KPVTSFLPHLLMSTPPIP*VSTEPAPTA 602
            G  A + P++ P  +P ++  P +   TPP P +S  P P+A
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA 1720


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 382 DLFPTALRVMAMATFLMCGRLGTITGAVAFPALIE 278
           ++FP+ +R  +      CG+ G I  A+ F  L E
Sbjct: 484 EVFPSRVRAFSHGICAACGKAGAILSALLFNKLTE 518


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 489 ASSTPLAMPQKPVTSFLPHLLMSTPPIP*VSTEPAPTAA 605
           A + P   P  P+   LP  + + PP+P  +  P P  A
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 382 DLFPTALRVMAMATFLMCG 326
           + F ++L+VMAM  F++CG
Sbjct: 221 EFFVSSLKVMAMVGFIICG 239


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 138 IVESEARASPLVRDNKPTVNEIINNLNSP 52
           +V++E++   L+R +K  VN+ I+ L  P
Sbjct: 57  VVKNESKIMCLIRQDKDIVNQAISQLKVP 85


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 621 SRTCRVRQWARAPCSPTVSEECSS 550
           SR C++ +W+R   SPT+  + S+
Sbjct: 343 SRHCKIGKWSRVEGSPTLPSQHST 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,684
Number of Sequences: 5004
Number of extensions: 37898
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)