Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e23
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0082 - 4060018-4061604                                           30   1.7  
03_02_0131 - 5796564-5796605,5797188-5797421,5798415-5798717,579...    29   2.9  
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307...    29   5.2  
03_05_0896 - 28592658-28593331,28594069-28595455                       28   6.8  

>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 480 GSAASSTPLAMPQKPVTSFLPHLL-MSTPPIP*VSTEPAPTAA 605
           G ++SST L  P  P T+  P LL +  PP+P       PT A
Sbjct: 28  GESSSSTALRTPAAPTTTRGPTLLFLPAPPVPAPLVHAPPTLA 70


>03_02_0131 -
           5796564-5796605,5797188-5797421,5798415-5798717,
           5799260-5799847,5800594-5800749,5800861-5800919,
           5801935-5802262
          Length = 569

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 304 AVAFPALIEYGCIPPFITIAAVL 236
           AVAFPA++  GC+ PF  I A +
Sbjct: 74  AVAFPAVVALGCLLPFAFILAAV 96


>06_01_0433 -
           3078576-3078780,3078797-3078951,3079782-3079821,
           3079957-3080009,3080091-3080199,3080324-3080448,
           3081112-3081201,3081280-3081342,3081453-3081544,
           3081641-3081722,3081913-3082086,3082183-3082264,
           3083100-3083224,3083312-3083389,3084047-3084402,
           3085311-3085608
          Length = 708

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 474 RDGSAASSTPLAMPQKPVTSFLPHLLM--STPPIP*VSTEPAPT 599
           RDG +A   PLA         LP  L+  STPP P  S  PAPT
Sbjct: 40  RDGGSAQR-PLAPAPLVKQPVLPTFLVPTSTPPAPTQSPAPAPT 82


>03_05_0896 - 28592658-28593331,28594069-28595455
          Length = 686

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 207 SR*QAQPQTPRTAAIVMKGGMQPYSMRAGNATAPVMVPSRPH 332
           +R    P  P +A  V+  G +P  M +  A AP+     PH
Sbjct: 305 TRSMEMPPPPSSAPAVVAAGRKPPEMTSAAAVAPMATVGNPH 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,779
Number of Sequences: 37544
Number of extensions: 314886
Number of successful extensions: 1156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)