Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e23
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical...    33   0.16 
Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical p...    31   0.86 
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    28   8.0  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    28   8.0  
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    28   8.0  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical
           protein Y66D12A.13 protein.
          Length = 533

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 382 DLFPTALRVMAMATFLMCGRLGTITGAVAF 293
           ++FPT +R +A A   +CGRLG + G + F
Sbjct: 438 EMFPTGIRNIASAHINVCGRLGNVFGPMVF 467


>Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = -3

Query: 382 DLFPTALRVMAMATFLMCGRLGTITGAVAFPALIEYGCIPPFITIAAVLGVCGCA----- 218
           +L PTA+R ++ +T  +C R G +     F   +  G   P +  A +L + G A     
Sbjct: 449 ELMPTAIRSISYSTAQLCSRFGIVFAPHVFHLNLYTGIDFPVLPYAILLAI-GLADFIFF 507

Query: 217 CYLLPNTTLKKLE 179
            +L+P T  K LE
Sbjct: 508 RFLIPETKNKPLE 520


>Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = -3

Query: 382 DLFPTALRVMAMATFLMCGRLGTITGAVAFPALIEYGCIPPFITIAAVLGVCGCA----- 218
           +L PTA+R ++ +T  +C R G +     F   +  G   P +  A +L + G A     
Sbjct: 449 ELMPTAIRSISYSTAQLCSRFGIVFAPHVFHLNLYTGIDFPVLPYAILLAI-GLADFIFF 507

Query: 217 CYLLPNTTLKKLE 179
            +L+P T  K LE
Sbjct: 508 RFLIPETKNKPLE 520


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -3

Query: 382 DLFPTALRVMAMATFLMCGRLGTITG-AVAFPALIEYGCIPPFITIAAVLGVCGCACYLL 206
           ++FPT +R + + T  +  R+G +    +A+ + I Y  IP  I  +  +     +C+ L
Sbjct: 429 EIFPTRIRTIGIGTCSLLARIGALLAPQMAYLSEI-YPPIPYIIVCSIGIISLLISCFFL 487

Query: 205 PNT 197
           P+T
Sbjct: 488 PDT 490


>Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical
           protein W09D6.5 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 252 VMKGGMQPYSMRAGNATAPVMVPS 323
           ++KGG Q YSM   NA AP++  S
Sbjct: 147 IVKGGPQKYSMSRPNAFAPMIAQS 170


>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 477 DGSAASSTPLAMPQKPVTSFLPHLLMSTPPIP*VSTEPAPTAALCRYV-SMSVCTG 641
           DG +   TP+ +       ++PH ++ TPP      +P P   +   V +   C+G
Sbjct: 5   DGKSMPPTPVPIGSSQFYRWMPHPIVDTPPSDATWRKPVPRGRIRDLVAAFDQCSG 60


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 251 DSGCPGSLRLCLLPAAKYYPEEIRINLKVKQI 156
           D  CPG    C    A+YYPE +  ++K K +
Sbjct: 891 DEKCPGKTNSC----ARYYPESVGESMKFKNL 918


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 633 TRTCSRTCRVRQWARAPCSPTVSEECS 553
           T++CS++C + Q A+ PC       CS
Sbjct: 296 TQSCSQSCSIAQPAQMPCMTESINSCS 322


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 633 TRTCSRTCRVRQWARAPCSPTVSEECS 553
           T++CS++C + Q A+ PC       CS
Sbjct: 516 TQSCSQSCSIAQPAQMPCMTESINSCS 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,068,295
Number of Sequences: 27780
Number of extensions: 231398
Number of successful extensions: 818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)