Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e23
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 459 TELVPRDGSAASSTPLAMPQKPVTSFLPHLLMST 560
           T L P     +SS P+  PQ+    FLP   MST
Sbjct: 805 TILSPVREKLSSSQPMQPPQQNPYMFLPVSYMST 838


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 273 PYSMRAGNATAPVMVPSRP 329
           P S+++G+A   ++VPS+P
Sbjct: 391 PKSIKSGDAAIVMLVPSKP 409


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 604 AAVGAGSVLTYGIGGVLINRCG 539
           AAV A +V   G+GGV +   G
Sbjct: 564 AAVAAAAVAAAGVGGVPVVGAG 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,200
Number of Sequences: 438
Number of extensions: 2848
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)