Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e22
         (130 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC060789-1|AAH60789.1|  742|Homo sapiens collectin sub-family me...    27   8.2  
AB052103-1|BAB39148.1|  622|Homo sapiens scavenger receptor with...    27   8.2  
AB038518-1|BAB39147.1|  742|Homo sapiens scavenger receptor with...    27   8.2  
AB034251-1|BAD83592.1|  742|Homo sapiens nurse cell scavenger re...    27   8.2  
AB005145-1|BAB72147.1|  742|Homo sapiens collectin placenta 1 pr...    27   8.2  

>BC060789-1|AAH60789.1|  742|Homo sapiens collectin sub-family
           member 12 protein.
          Length = 742

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  YGHYEIVLNLTNLNFTKIKCKSCYT 112
           Y H  +++NL NLN T+++ ++  T
Sbjct: 197 YSHNVVIMNLNNLNLTQVQQRNLIT 221


>AB052103-1|BAB39148.1|  622|Homo sapiens scavenger receptor with
           C-type lectin type II protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  YGHYEIVLNLTNLNFTKIKCKSCYT 112
           Y H  +++NL NLN T+++ ++  T
Sbjct: 197 YSHNVVIMNLNNLNLTQVQQRNLIT 221


>AB038518-1|BAB39147.1|  742|Homo sapiens scavenger receptor with
           C-type lectin type I protein.
          Length = 742

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  YGHYEIVLNLTNLNFTKIKCKSCYT 112
           Y H  +++NL NLN T+++ ++  T
Sbjct: 197 YSHNVVIMNLNNLNLTQVQQRNLIT 221


>AB034251-1|BAD83592.1|  742|Homo sapiens nurse cell scavenger
           receptor 2 protein.
          Length = 742

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  YGHYEIVLNLTNLNFTKIKCKSCYT 112
           Y H  +++NL NLN T+++ ++  T
Sbjct: 197 YSHNVVIMNLNNLNLTQVQQRNLIT 221


>AB005145-1|BAB72147.1|  742|Homo sapiens collectin placenta 1
           protein.
          Length = 742

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  YGHYEIVLNLTNLNFTKIKCKSCYT 112
           Y H  +++NL NLN T+++ ++  T
Sbjct: 197 YSHNVVIMNLNNLNLTQVQQRNLIT 221


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,604
Number of Sequences: 237096
Number of extensions: 162297
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 76,859,062
effective HSP length: 23
effective length of database: 71,405,854
effective search space used: 1356711226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)