Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e22
         (130 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   5.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   5.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    18   9.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    18   9.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 88  LGKI*ICQI*NNFIMPIIVSTFSNFLGQH 2
           LGK    Q+    I+ +I+ T + ++G+H
Sbjct: 135 LGKTTYMQLVFMGIVELIMFTVNKYVGEH 163


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 52  FIMPIIVSTFSNFLGQ 5
           FI+P+IVS+  + + Q
Sbjct: 110 FILPLIVSSLISGMAQ 125


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -1

Query: 58  NNFIMPIIVSTFS 20
           N+F+ P+I + F+
Sbjct: 669 NSFVNPVIYTVFN 681


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 44  HYEIVLNLTNLNFTKIKCKSCYT 112
           HY +  NLT L    +  K  +T
Sbjct: 461 HYHLYTNLTALRKRDVLKKGNFT 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,094
Number of Sequences: 438
Number of extensions: 277
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)