Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e21
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   1.2  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   1.6  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   3.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   3.7  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   4.9  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   4.9  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    23   6.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    23   6.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    23   8.5  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    23   8.5  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    23   8.5  

>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 229 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 122
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 144 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 281
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 51  HHLMAWGLPWQQQSTVTQC 107
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -1

Query: 222 GGLLTPLVAPVLXXXXXXXXXXXXXXXXXAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKH 43
           G L+TP V PV+                    G    GSI++Q + A  V P P   +K 
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV-GVTTTGSILTQSSPALPVQPVPLAYSKP 688

Query: 42  HPFSTS 25
            P + S
Sbjct: 689 APTTKS 694


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = -3

Query: 250 GRRCCNIWHWGSVDSISGSRARFQLSGNSG 161
           G  C N+W     + + G R  + + G  G
Sbjct: 56  GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 250 GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 146
           G R C    W S+D +S S A  Q  G      +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 204 MESTDPQCHILQHRRPRLPLMQLEAP 281
           M+S   Q ++L   RP LPL     P
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQP 113


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 195 EPLMESTDPQCHILQHRRPRLP 260
           +P   +TD Q ++ +H  PRLP
Sbjct: 506 DPDPSNTDTQWNVEEHINPRLP 527


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  ERCRERVMFSITSWRGGYHGSSSQ 93
           E  R+RV FS+TS  G     SSQ
Sbjct: 77  EESRKRVSFSLTSNDGAKSDRSSQ 100


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 32  ENG*CLASPHGVGATMAAAVNCDTM 106
           ENG  L  P G GA +A A  C  +
Sbjct: 168 ENGTKLPCPDGYGAFLATACVCSLL 192


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -3

Query: 115 GRQHCVTVDCCCHGSPHAM 59
           G  HC +V C   G P  M
Sbjct: 14  GESHCKSVGCIVEGCPPGM 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,800
Number of Sequences: 5004
Number of extensions: 17149
Number of successful extensions: 37
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)