Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e21
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622 28 1.3
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 2.3
09_04_0269 + 16265191-16265472,16265574-16266149 27 2.3
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 26 4.1
12_02_0315 - 17417161-17417401,17419426-17419616 26 5.4
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 26 5.4
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135... 25 7.1
10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096 25 9.4
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 25 9.4
04_04_0146 + 23106325-23108154 25 9.4
>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
Length = 66
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = -3
Query: 187 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 80
R +G+K RCC S R+ + R + C+ CCC
Sbjct: 17 RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 199 GSRARFQLSGNSGRKHSRCCTS 134
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 204 MESTDPQCHILQHRRPRLPL 263
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 220 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFSG 113
GS DS+ G + R + N K C T I LRK SG
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSG 704
>12_02_0315 - 17417161-17417401,17419426-17419616
Length = 143
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -3
Query: 238 CNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 143
C IW ++ ++ G+++ F L+G RC
Sbjct: 16 CGIWQKAAMVALQGNKSWFGLAGGGATVRLRC 47
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 25.8 bits (54), Expect = 5.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 133 CLCSSGCASCRYS 171
C C +GC C+YS
Sbjct: 14 CQCGNGCGGCKYS 26
>03_03_0229 -
15612829-15612897,15612982-15613083,15613503-15613553,
15613637-15613706,15613816-15613984,15614217-15614326,
15614443-15614510,15615412-15615480,15616649-15616692,
15616803-15617050,15617620-15617633
Length = 337
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 169 NSGRKHSRCCTSILRKFSGR 110
N+GR+H+ C+S L ++ GR
Sbjct: 200 NNGRQHTGSCSSPLTRYLGR 219
>10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096
Length = 404
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -3
Query: 241 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQH 104
CCN W V +S S LSG + + S KF+ +H
Sbjct: 352 CCNAWRLAVVHPVSVSWLVLSLSGRAAEVYD---LSNSMKFTSHEH 394
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 211 DSISGSRARFQLSGNSGRKHSRCCTSILRKFS 116
D + +R R + G + K RCC +ILRK S
Sbjct: 127 DISNKARERSRAYGAAVTKIERCCPNILRKRS 158
>04_04_0146 + 23106325-23108154
Length = 609
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +3
Query: 225 CHILQHRRPRL--PLMQLEA 278
CH+L+HR P L PL++L A
Sbjct: 127 CHLLRHRLPHLAHPLLRLLA 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,145,514
Number of Sequences: 37544
Number of extensions: 147043
Number of successful extensions: 349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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