Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e21
(285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.076
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.18
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 0.41
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 0.41
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 5.0
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 26 5.0
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 5.0
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 26 5.0
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 25 8.7
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 25 8.7
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 25 8.7
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 25 8.7
AL021386-2|CAA16165.1| 240|Caenorhabditis elegans Hypothetical ... 25 8.7
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.076
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 271 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 167
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 0.18
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 73 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 225
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 0.41
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = -3
Query: 283 HGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSG 113
H SC+SG G +C C + D ISG S G + +C L+ + G
Sbjct: 1196 HCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYFG 1250
Query: 112 RQHCVTVDCCCHGS 71
R HC + C C S
Sbjct: 1251 R-HC-SQSCRCANS 1262
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.5 bits (63), Expect = 0.41
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = -3
Query: 283 HGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSG 113
H SC+SG G +C C + D ISG S G + +C L+ + G
Sbjct: 1196 HCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYFG 1250
Query: 112 RQHCVTVDCCCHGS 71
R HC + C C S
Sbjct: 1251 R-HC-SQSCRCANS 1262
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 5 EKVRSWSDVENG*CLASPHGVGATMAAAVN 94
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 5 EKVRSWSDVENG*CLASPHGVGATMAAAVN 94
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 5 EKVRSWSDVENG*CLASPHGVGATMAAAVN 94
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 25.8 bits (54), Expect = 5.0
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +3
Query: 201 LMESTDPQCHILQHRRPRLPLMQLE 275
L+E DP C ++ +++P++ +E
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMME 92
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 202 SGSRARFQLSGNSG 161
S SR RF+LSGNSG
Sbjct: 308 SRSRGRFELSGNSG 321
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -3
Query: 151 SRCCTSILRKFSGRQHCVTVDCC 83
+ CC K G C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -3
Query: 151 SRCCTSILRKFSGRQHCVTVDCC 83
+ CC K G C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
protein K10C2.1 protein.
Length = 2314
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 5 EKVRSWSDVENG*CLASPHGVG-ATMAAAVNCDTM 106
E V SW+ N L SP GVG + ++N DT+
Sbjct: 654 ENVYSWNKAANVIFLESPRGVGFSVQDPSLNNDTI 688
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -3
Query: 220 GSVDSISGSRARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 65
G V + F +G +H + C T +RK +HC C + H
Sbjct: 23 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 76
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -3
Query: 220 GSVDSISGSRARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 65
G V + F +G +H + C T +RK +HC C + H
Sbjct: 131 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 184
>AL021386-2|CAA16165.1| 240|Caenorhabditis elegans Hypothetical
protein F57E7.2 protein.
Length = 240
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 226 HWGSVDSISGSRARFQLSGNSGRKHSR-CCTSILRKFSGRQHCVTVDC 86
HW ++D I+ + N GRK R +L KF +++ + C
Sbjct: 101 HWVTIDPINREQVWSSSGLNLGRKEVRDAVKKLLYKFKAKKNYINYLC 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,231,308
Number of Sequences: 27780
Number of extensions: 108219
Number of successful extensions: 237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -