Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e19
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.47 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.4  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    26   5.8  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    26   7.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   7.6  

>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -2

Query: 367 LCLHDQNVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSEATGQEI 188
           LCL+  ++     VN   NGKFN  ++  S L  K NE+     ++ +L +    + +E+
Sbjct: 390 LCLNTSSIVFNATVNFTRNGKFN-TSIFSSNLNPKVNELLQADFKQAILRKRKNESPEEV 448

Query: 187 D 185
           +
Sbjct: 449 E 449


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 532 LPLLCHHSVIQSCSSFSYLFFLHFQSHPQLGELQHYAILLHTSD 663
           L L   HS+ Q    +S+L F +F    + GE Q Y  L+  SD
Sbjct: 495 LALKRFHSIYQIYKKWSFLKFDYFTQCAEDGEFQEYVELVEWSD 538


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 102 SMSNTLFLSTLTLGALFSFFINLSAILSSISWPVASLYSANTFF*SLLNGTSLS 263
           S S+T   ST       SF+ N++   S++S P  +    +TF  S +  +SLS
Sbjct: 660 SSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLS 713


>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 322 AENNGKFNWHAVIMSVLQKK 263
           AE NG  + HA++MS+L KK
Sbjct: 7   AEFNGSGSMHALLMSILSKK 26


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +3

Query: 147 LFSFFINLSAILSSISWPVASLYSANTFF*SLLN-------GTSLSFFCKTDIITACQLN 305
           + +FFI+L  +   I  P +  Y  N  F  L         GT+++FF    I+ A  + 
Sbjct: 98  ILNFFISLVVLFGLIMKPYS--YPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFIT 155

Query: 306 LPLFSALTS 332
           L +F ALT+
Sbjct: 156 LGVFVALTA 164


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 232 KKVLAEYSEATGQEIDDRIADKFIKKLK 149
           K+   E + +T +E D  +  KF+KKLK
Sbjct: 74  KRSFDESNLSTNEEADKPVESKFVKKLK 101


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 490 LYLDVYVSSAF*S-PLPLLCHHSVIQSCSSFSYLFFLHFQSHPQLGELQHYAILLH--TS 660
           L+    VSS F    LP   HH+       + + FF  F SH +     H AI +H   S
Sbjct: 46  LFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCR---RFHIAIFIHPYDS 102

Query: 661 DVSSLLCVVFW 693
           +V    C  F+
Sbjct: 103 NVVPFFCFFFY 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,722
Number of Sequences: 5004
Number of extensions: 43477
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)