Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e19
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0002 - 4477-6144,6571-7440                                       30   2.0  
11_01_0003 - 6099-7766,8193-9062                                       30   2.0  
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    30   2.6  
03_01_0156 - 1250251-1250436,1250633-1250674,1250794-1250835,125...    28   8.1  

>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 529 PLPLLCHHSVIQSCSSFSYLFFLHFQSHP 615
           P P  C+H V  S    + L +L+ Q+HP
Sbjct: 698 PFPASCYHKVAGSLGRMAQLLYLYTQAHP 726


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 529 PLPLLCHHSVIQSCSSFSYLFFLHFQSHP 615
           P P  C+H V  S    + L +L+ Q+HP
Sbjct: 698 PFPASCYHKVAGSLGRMAQLLYLYTQAHP 726


>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
            29210132-29210171,29210254-29210323,29210419-29210488,
            29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 93   KIHSMSNTLFLST-LTLGALFSFFINLSAILSSISWPVASLYSANTF 230
            +I S SN  F++  +TLG L S  INL  + SS  W  + L S ++F
Sbjct: 892  EILSSSNLKFVAMFITLGKLVSERINLVEMFSSPEWASSDLASRSSF 938


>03_01_0156 -
           1250251-1250436,1250633-1250674,1250794-1250835,
           1250935-1251034,1251125-1251186,1251333-1251356
          Length = 151

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 675 KRRNVRSMKQNCIVLKLPQLRMRLKMKEKKVRKRRTGLNHRMVTQ*RQRRLKSRRN 508
           KR+ +      C + +L  L ++L+     +R R+T L    V + R++ +K R++
Sbjct: 28  KRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKD 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,083,059
Number of Sequences: 37544
Number of extensions: 233926
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)