Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e19
         (839 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533548-1|CAG38579.1|  379|Homo sapiens LYAR protein.                 55   4e-07
BC015796-1|AAH15796.1|  379|Homo sapiens hypothetical protein FL...    55   4e-07
AK000432-1|BAA91162.1|  379|Homo sapiens protein ( Homo sapiens ...    55   4e-07
AF229835-1|AAF42870.1|  110|Homo sapiens apoptosis-related prote...    55   4e-07
AK127997-1|BAC87222.1|  148|Homo sapiens protein ( Homo sapiens ...    33   1.7  
U22816-1|AAC50173.1| 1202|Homo sapiens LAR-interacting protein 1...    31   3.9  
U22815-1|AAC50172.1| 1185|Homo sapiens LAR-interacting protein 1...    31   3.9  
BC034046-1|AAH34046.1| 1202|Homo sapiens protein tyrosine phosph...    31   3.9  
AK128592-1|BAC87517.1| 1093|Homo sapiens protein ( Homo sapiens ...    30   9.1  

>CR533548-1|CAG38579.1|  379|Homo sapiens LYAR protein.
          Length = 379

 Score = 54.8 bits (126), Expect = 4e-07
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
 Frame = -2

Query: 334 EEVNAENNGKFNWHAVIMSVL-QKKDNEVPFKRLQKKVLAEYSEATGQ--EIDDRIADKF 164
           E+  A   GKFNW   I ++L Q  DNE+  K+L+KKVLA+Y   T +    ++ +   F
Sbjct: 299 EDDEAPAKGKFNWKGTIKAILKQAPDNEITIKKLRKKVLAQYYTVTDEHHRSEEELLVIF 358

Query: 163 IKKLKSAPNVRVDKNRVLLIE 101
            KK+   P  ++ K++V L++
Sbjct: 359 NKKISKNPTFKLLKDKVKLVK 379


>BC015796-1|AAH15796.1|  379|Homo sapiens hypothetical protein
           FLJ20425 protein.
          Length = 379

 Score = 54.8 bits (126), Expect = 4e-07
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
 Frame = -2

Query: 334 EEVNAENNGKFNWHAVIMSVL-QKKDNEVPFKRLQKKVLAEYSEATGQ--EIDDRIADKF 164
           E+  A   GKFNW   I ++L Q  DNE+  K+L+KKVLA+Y   T +    ++ +   F
Sbjct: 299 EDDEAPAKGKFNWKGTIKAILKQAPDNEITIKKLRKKVLAQYYTVTDEHHRSEEELLVIF 358

Query: 163 IKKLKSAPNVRVDKNRVLLIE 101
            KK+   P  ++ K++V L++
Sbjct: 359 NKKISKNPTFKLLKDKVKLVK 379


>AK000432-1|BAA91162.1|  379|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20425 fis, clone KAT02707. ).
          Length = 379

 Score = 54.8 bits (126), Expect = 4e-07
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
 Frame = -2

Query: 334 EEVNAENNGKFNWHAVIMSVL-QKKDNEVPFKRLQKKVLAEYSEATGQ--EIDDRIADKF 164
           E+  A   GKFNW   I ++L Q  DNE+  K+L+KKVLA+Y   T +    ++ +   F
Sbjct: 299 EDDEAPAKGKFNWKGTIKAILKQAPDNEITIKKLRKKVLAQYYTVTDEHHRSEEELLVIF 358

Query: 163 IKKLKSAPNVRVDKNRVLLIE 101
            KK+   P  ++ K++V L++
Sbjct: 359 NKKISKNPTFKLLKDKVKLVK 379


>AF229835-1|AAF42870.1|  110|Homo sapiens apoptosis-related protein
           PNAS-5 protein.
          Length = 110

 Score = 54.8 bits (126), Expect = 4e-07
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
 Frame = -2

Query: 334 EEVNAENNGKFNWHAVIMSVL-QKKDNEVPFKRLQKKVLAEYSEATGQ--EIDDRIADKF 164
           E+  A   GKFNW   I ++L Q  DNE+  K+L+KKVLA+Y   T +    ++ +   F
Sbjct: 30  EDDEAPAKGKFNWKGTIKAILKQAPDNEITIKKLRKKVLAQYYTVTDEHHRSEEELLVIF 89

Query: 163 IKKLKSAPNVRVDKNRVLLIE 101
            KK+   P  ++ K++V L++
Sbjct: 90  NKKISKNPTFKLLKDKVKLVK 110


>AK127997-1|BAC87222.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46115 fis, clone TESTI2037085. ).
          Length = 148

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -3

Query: 690 KNNAKKRRNVRSMKQNCIVLKLPQLRMRLKMKEKKVRKRRTGLNHRMVTQ*RQRRLKSRR 511
           K   KK++  +  K+     K  + R + K K+KK RKRR     R   + R+RR + RR
Sbjct: 57  KKKKKKKKKNKKKKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRR 116



 Score = 32.3 bits (70), Expect = 2.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -3

Query: 690 KNNAKKRRNVRSMKQNCIVLKLPQLRMRLKMKEKKVRKRRTGLNHRMVTQ*RQRRLKSRR 511
           KN  KK++  +  K+     K  + + R K + ++ R+RR     R   + R+RR + RR
Sbjct: 65  KNKKKKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 124

Query: 510 NVNVKIQL 487
               K+ L
Sbjct: 125 RKEGKLTL 132



 Score = 30.7 bits (66), Expect = 6.9
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -3

Query: 690 KNNAKKRRNVRSMKQNCIVLKLPQLRMRLKMKEKKVRKRRTGLNHRMVTQ*RQRRLKSRR 511
           K   KK++N +  K+     K  + + + K K+K+ ++RR     R   + R+RR + RR
Sbjct: 58  KKKKKKKKNKKKKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRRR 117


>U22816-1|AAC50173.1| 1202|Homo sapiens LAR-interacting protein 1b
           protein.
          Length = 1202

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -2

Query: 355 DQNVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSEATG-QEIDDR 179
           D + AR + + +E         V  ++ QK+D E     L+K+ LA   EAT   +++D+
Sbjct: 286 DLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLNDK 345

Query: 178 IADKFIKKLKSAPNVRVDKNRVL 110
           + ++   K  S      DKNR L
Sbjct: 346 LENEIANK-DSMHRQTEDKNRQL 367


>U22815-1|AAC50172.1| 1185|Homo sapiens LAR-interacting protein 1a
           protein.
          Length = 1185

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -2

Query: 355 DQNVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSEATG-QEIDDR 179
           D + AR + + +E         V  ++ QK+D E     L+K+ LA   EAT   +++D+
Sbjct: 286 DLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLNDK 345

Query: 178 IADKFIKKLKSAPNVRVDKNRVL 110
           + ++   K  S      DKNR L
Sbjct: 346 LENEIANK-DSMHRQTEDKNRQL 367


>BC034046-1|AAH34046.1| 1202|Homo sapiens protein tyrosine
           phosphatase, receptor type, f polypeptide (PTPRF),
           interacting protein.
          Length = 1202

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -2

Query: 355 DQNVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSEATG-QEIDDR 179
           D + AR + + +E         V  ++ QK+D E     L+K+ LA   EAT   +++D+
Sbjct: 286 DLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLNDK 345

Query: 178 IADKFIKKLKSAPNVRVDKNRVL 110
           + ++   K  S      DKNR L
Sbjct: 346 LENEIANK-DSMHRQTEDKNRQL 367


>AK128592-1|BAC87517.1| 1093|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46751 fis, clone TRACH3022960, weakly  similar
           to Dynein beta chain, ciliary. ).
          Length = 1093

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 277 VLQKKDNEVPFKRLQKKVLAEYSEATGQEIDDRIADKFIKKLKSAPNVRVDKNRV 113
           +LQ   N+   K ++KK+L   S + G  ++D  A K +   K   N    K ++
Sbjct: 200 ILQSAANKKQLKDIEKKILETLSSSEGNILEDESAIKVLDSAKMMSNEITKKQQI 254


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,424,927
Number of Sequences: 237096
Number of extensions: 1348751
Number of successful extensions: 3060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3048
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)