Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e19
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    38   0.017
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    38   0.017
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    38   0.017
U86404-1|AAB49975.2|  993|Drosophila melanogaster egalitarian pr...    31   2.0  
BT009999-1|AAQ22468.1| 1004|Drosophila melanogaster RE33408p pro...    31   2.0  
AE013599-3677|AAF47054.3|  885|Drosophila melanogaster CG4051-PA...    31   2.0  
AF080444-1|AAD29852.1|  268|Drosophila melanogaster pugilistDomi...    29   7.9  
AE014296-247|AAN11477.1|  469|Drosophila melanogaster CG32320-PA...    29   7.9  

>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 37.9 bits (84), Expect = 0.017
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 280 SVLQKKDNEVPFKR-LQKKVLAEYSEATGQEIDDRIADKFIKKLKSAPNVRVDKNR 116
           +++QK+ +   FK+ L+ K+L      TGQ+IDD I D  I  +KSA N     NR
Sbjct: 256 AIIQKRTDLTKFKKNLENKILLNTEIRTGQDIDDCI-DILINNIKSAANEATPPNR 310


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 37.9 bits (84), Expect = 0.017
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 280 SVLQKKDNEVPFKR-LQKKVLAEYSEATGQEIDDRIADKFIKKLKSAPNVRVDKNR 116
           +++QK+ +   FK+ L+ K+L      TGQ+IDD I D  I  +KSA N     NR
Sbjct: 256 AIIQKRTDLTKFKKNLENKILLNTEIRTGQDIDDCI-DILINNIKSAANEATPPNR 310


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 37.9 bits (84), Expect = 0.017
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 280 SVLQKKDNEVPFKR-LQKKVLAEYSEATGQEIDDRIADKFIKKLKSAPNVRVDKNR 116
           +++QK+ +   FK+ L+ K+L      TGQ+IDD I D  I  +KSA N     NR
Sbjct: 256 AIIQKRTDLTKFKKNLENKILLNTEIRTGQDIDDCI-DILINNIKSAANEATPPNR 310


>U86404-1|AAB49975.2|  993|Drosophila melanogaster egalitarian
           protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 361 LHDQ---NVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSE 206
           +HDQ   N+AR  ++  EN   F+       ++Q K NEV  ++ Q+KV  E S+
Sbjct: 702 IHDQLFGNLAR--QIKPENRALFSELCTEQILMQIKPNEVKIRKKQRKVSTEVSD 754


>BT009999-1|AAQ22468.1| 1004|Drosophila melanogaster RE33408p
           protein.
          Length = 1004

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 361 LHDQ---NVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSE 206
           +HDQ   N+AR  ++  EN   F+       ++Q K NEV  ++ Q+KV  E S+
Sbjct: 713 IHDQLFGNLAR--QIKPENRALFSELCTEQILMQIKPNEVKIRKKQRKVSTEVSD 765


>AE013599-3677|AAF47054.3|  885|Drosophila melanogaster CG4051-PA
           protein.
          Length = 885

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 361 LHDQ---NVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSE 206
           +HDQ   N+AR  ++  EN   F+       ++Q K NEV  ++ Q+KV  E S+
Sbjct: 713 IHDQLFGNLAR--QIKPENRALFSELCTEQILMQIKPNEVKIRKKQRKVSTEVSD 765


>AF080444-1|AAD29852.1|  268|Drosophila melanogaster
           pugilistDominant protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
 Frame = +3

Query: 69  SFMFQIHIKIHSMSNTLF--LSTL--TLGALFSFFINLSAILSSISWPVASLYSANTFF* 236
           S +F +   + S+ ++LF  LS+L   L +LFS   +L ++LSS+   ++SL+S  +   
Sbjct: 183 SSLFSLLSSLFSLLSSLFSLLSSLFSLLSSLFSLLSSLFSLLSSLFSLLSSLFSLLSXLF 242

Query: 237 SLLNGTSLSFFCKTDIITACQLNLP 311
           SLL+         + ++ +  L+ P
Sbjct: 243 SLLSSLFSLLLSXSXLLCSXVLSPP 267


>AE014296-247|AAN11477.1|  469|Drosophila melanogaster CG32320-PA
           protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 449 SDNFNSRHSVQTINCIXXXXXXXXXXXRCLYCVTIL*FSPVLLFLTFFSFIFNLILNW 622
           S+ F+ +HS QT  CI           RC+    +  F     F +  ++ FN  LNW
Sbjct: 373 SETFSEKHSCQTCTCIENCFLEHFFKARCMEARLLNAFESTQEFKSCATW-FNSRLNW 429


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,138,719
Number of Sequences: 53049
Number of extensions: 430727
Number of successful extensions: 1244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)