Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e19
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   7.2  
U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine rece...    28   9.5  

>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 553 SVIQSCSSFSYLFFLHFQSHPQLGELQHYAILLHTSDVSSLLCVVFWT 696
           + I +CSSF Y  FL  +       L  +++  H SD S +   +FW+
Sbjct: 2   TTIYTCSSFLYFLFLGGKK-----SLLKFSVCYHRSDRSGVTTPLFWS 44


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 369 VCVSTIRMLPESKRLMLRTMANLTGTQLLCQFCRRKIMKSHLKGF 235
           VC + +   P++K+ M+     +TG  ++CQF + ++M     GF
Sbjct: 129 VCCTKLPTCPKTKKTMVNF---ITGKPIMCQFKQGRVMPCPENGF 170


>U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical
           protein F08D12.11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 24  KRTHGQTGSLEIGKFSFMFQIHIKIHSMSNT 116
           KR H  T  LE+G   F++    ++H M  T
Sbjct: 137 KRIHKTTDGLEVGTMEFVYWTEERVHFMRRT 167


>U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 14 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 159 FINLSAILSSISWPVASLYSANTFF 233
           F+N SA+L +I W    +YS N+FF
Sbjct: 45  FLN-SAVLGTILWRCREVYSTNSFF 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,903
Number of Sequences: 27780
Number of extensions: 238925
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)