Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e17
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   4.3  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    27   4.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   7.5  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   7.5  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 548 FKFCPSWVFRRSSTARIPV*PRSWITTSRCTYPRLCKKPSLKSTR 414
           FKF P W+F  S  A + +   +  +   CT    C K  L+S +
Sbjct: 454 FKFTPLWIFESSDLAALDIAWTADNSLILCTRNGTCWKRELRSKK 498


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 341 SMPTDPSSTSSWALNASLCSSANTVDEI 258
           ++P+D SSTS   +   LC+S  T +E+
Sbjct: 565 NLPSDSSSTSLGKVKLELCNSLETNEEL 592


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 732 MAYEGNDASMVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVRVTVPKF 574
           M  +G+ A     + N IN  + +  KL+D  +L  E +K +ST    T+P F
Sbjct: 492 MLNDGSTAPAKNDIRNVIN-TNNLDAKLSDESELMIEKNKSYSTPASSTIPTF 543


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 693  LPNEI--NGLDGILQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQ 520
            LP E+  +GL  IL  L+D   L+    +  S  +R+    FK+E    LLQ L  L   
Sbjct: 1434 LPKELLQSGLRPILMNLSDHNKLSVNGLEGLSRLLRLLTNYFKVEIGRKLLQHLNVLSDS 1493

Query: 519  AIFNRQNSGLTK 484
             +    +  L K
Sbjct: 1494 KVLETASLSLLK 1505


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = -3

Query: 813 TVNIPMMYQENNFKYGESHDLNAQLLEMAYEGNDASMVIV--LPNE--INGLDGI-LQKL 649
           T+ I   +    + YG  +D      E   E  +  M +    P+   +N  D + ++KL
Sbjct: 333 TLKILQKWGSGCYFYGLGNDEQLDEFEKRLESGEKVMALFCEFPSNPLLNSPDLVRIRKL 392

Query: 648 ADGYDLTAELDKMFSTKVRVTV 583
           AD YD    +D+     V V V
Sbjct: 393 ADSYDFAVVVDETIGNFVNVEV 414


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 344 ASMPTDPSSTSSWALNASLCSSANTVDEIES 252
           ++ PT  S TSS A ++SL SS+ T   + S
Sbjct: 101 SASPTSSSLTSSSATSSSLASSSTTSSSLAS 131


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 780 NFKYGESHDLNAQLLEMAYEGNDASMVIVLPNE 682
           N  Y ES         + YEGND +M+I  P +
Sbjct: 557 NEGYLESQISTELFANLRYEGNDTTMMIAKPKD 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,417
Number of Sequences: 5004
Number of extensions: 56988
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)