Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e17
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    52   4e-07
11_02_0012 - 7346282-7347136,7347234-7347593                           50   2e-06
01_06_0824 - 32243495-32244319,32244449-32244859                       49   5e-06
11_01_0771 + 6453130-6454488                                           48   7e-06
11_01_0750 - 6315126-6315896,6316371-6316784                           47   2e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869     46   3e-05
04_04_0619 + 26652923-26653267,26653440-26654273                       43   3e-04
04_04_0620 + 26656072-26656417,26656585-26657396                       43   3e-04
01_01_1152 + 9170628-9171899                                           37   0.017
11_02_0011 - 7337618-7338496,7338596-7338991                           36   0.052
05_06_0044 - 25150322-25151260                                         36   0.052
11_01_0767 + 6438648-6438809,6439146-6440000                           35   0.068
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672...    31   1.5  
03_02_0556 + 9448878-9449264                                           29   3.4  
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821...    29   5.9  
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557...    29   5.9  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 8/187 (4%)
 Frame = -3

Query: 813 TVNIPMMYQENNFKYGESHDLNAQLLEMAYE-GNDA---SMVIVLPNEINGLDGILQKL- 649
           +V  P M      +Y  S+D N ++L++ Y+ G D    SM I+LP   +GL  + +KL 
Sbjct: 277 SVQAPFMSTSKK-QYILSYD-NLKVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEKLN 334

Query: 648 ADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDND 469
           ++   L   +     T  +  +PKFKI    +   +L  LG+   F+ + + LT+++D+ 
Sbjct: 335 SEPEFLEKHIPTRQVTVGQFKLPKFKISFGFEASDLLKSLGLHLPFSSE-ADLTEMVDSP 393

Query: 468 E--PLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMRCARPPSPSFHADRPFLYFL-VGAE 298
           E   L+VS    K+F+                  +R A P +  F AD PFL+ +     
Sbjct: 394 EGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSA-PIAEDFVADHPFLFLIQEDMT 452

Query: 297 RIALFIG 277
            + LF+G
Sbjct: 453 GVVLFVG 459



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 8/187 (4%)
 Frame = -3

Query: 813  TVNIPMMYQENNFKYGESHDLNAQLLEMAY-EGNDA---SMVIVLPNEINGLDGILQKLA 646
            +V  P M      +Y  S+D + ++L++ Y +G D    SM I+LP   +GL  + +KL 
Sbjct: 529  SVQAPFMSTRKK-QYLSSYD-SLKVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEKLN 586

Query: 645  DGYDLTAELDKMFSTKV-RVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDND 469
               +       M    V +  +PKFKI        +L  LG+  +F  +   L +++D+ 
Sbjct: 587  SEPEFMENHIPMRPVHVGQFKLPKFKISFGFGASGLLKGLGLPLLFGSEVD-LIEMVDSP 645

Query: 468  --EPLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMRCARPPSPSFHADRPFLYFL-VGAE 298
              + L+VS    K+FI                     +RP   +F AD PF++ +     
Sbjct: 646  GAQNLFVSSVFHKSFIEVNEEGTEATAAVMVSMEH--SRPRRLNFVADHPFMFLIREDVT 703

Query: 297  RIALFIG 277
             + LFIG
Sbjct: 704  GVILFIG 710


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%)
 Frame = -3

Query: 804 IPMMYQENNFKYGESHDLNAQLLEMAYEGNDASMVIVLPNEINGLDGILQKLADGYDLTA 625
           + + Y      +G+  D+   +L+   E    SM I LP+  +GL  ++ K+A     TA
Sbjct: 211 LKLPYHRTMKNHGDGGDITPAILKHYGENVGLSMYIFLPDARDGLPALVDKMAVASSGTA 270

Query: 624 ELDKMFS-----TKVRV---TVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDND 469
               +        +++V    VP+FK+    ++ +VL  +GI A F+     L+ ++D  
Sbjct: 271 SSSFLRDHRPGRRRIKVGDLRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDG- 329

Query: 468 EPLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMRCARPPSP-SFHADRPFLYFLVGAERI 292
           E + V K + +A +                    C    SP  F AD PF +F+V  +  
Sbjct: 330 ELVVVEKVMHRAVVEVNEEGTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSD 389

Query: 291 A-LFIG 277
           A LF G
Sbjct: 390 AVLFAG 395


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
 Frame = -3

Query: 708 SMVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVRV---TVPKFKIETEIDLLQVL 538
           SM I LP+E +GL  +L+KL        E     + KV V    VP+F +  + +  + L
Sbjct: 248 SMYIYLPDERHGLPDMLRKLCSDPAALIESSAALTEKVPVGAFMVPRFTLSYKTNAAETL 307

Query: 537 PKLGIQAIFNRQNSGLTKILDND---EPLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMR 367
            +LG++  F    + L++++++    E + VS    ++F+                  + 
Sbjct: 308 RQLGLRLPFEYPGADLSEMVESSPEAEKIVVSAVYHESFVEVNEEGTEAAAATAVVMTLG 367

Query: 366 CARPPSP----SFHADRPFLYFL-VGAERIALFIGQ 274
           CA P +P     F AD PF++ +      + +F GQ
Sbjct: 368 CAAPSAPVHVVDFVADHPFMFLIKEDLTGVVVFAGQ 403


>11_01_0771 + 6453130-6454488
          Length = 452

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
 Frame = -3

Query: 708 SMVIVLPNEINGLDGILQKLAD--GYDLTAELDKMFSTKV-RVTVPKFKIETEIDLLQVL 538
           +M I LP+  +GL G+++++A   G+ L   +   +   V    VPKFK+     ++  L
Sbjct: 295 AMAIFLPDARDGLRGLVERMASRPGF-LHEHMPAAWPVPVGEFRVPKFKVSCGGSVVGAL 353

Query: 537 PKLGIQAIFNRQNSGLTKILDNDE---PLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMR 367
            +LG++  F+ + + L+ ++++D    PL+V     KA I                    
Sbjct: 354 EQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIEVNEEGTVAAAATMTRMLPS 413

Query: 366 CARPPSPSFHADRPFLYFLV 307
              PP   F A+ PF YF+V
Sbjct: 414 GVPPPPVDFVAEHPFAYFIV 433


>11_01_0750 - 6315126-6315896,6316371-6316784
          Length = 394

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
 Frame = -3

Query: 816 TTVNIPMMYQENNFKYGESHDLNAQLLEMAY-EGNDA---SMVIVLPNEINGLDGILQKL 649
           T+V +P +  +    +   HD N +++++ Y +G +    SM I LP++ +GL  + QK+
Sbjct: 205 TSVEVPFVEYDRTRLFAV-HD-NFKVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKI 262

Query: 648 ADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQN--SGLTKILD 475
                   +        V ++VP FKI  +ID+   L  +G++  F R+   S + K  D
Sbjct: 263 FSEPMFLEQHLPTEKCHVGISVPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDD 322

Query: 474 NDEPLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMRCARP-PSPSFHADRPFLYFL 310
           +  PL++S  + KA +                      +P P+  F AD PF + +
Sbjct: 323 SSGPLFLSDVLHKAVLEVDQKGIEETSVSMG-----LGKPLPAQHFKADHPFFFMI 373


>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
          Length = 258

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 8/174 (4%)
 Frame = -3

Query: 774 KYGESHDLNAQLLEMAYE-GNDA---SMVIVLPNEINGLDGILQKL-ADGYDLTAELDKM 610
           +Y  S+D + ++L++ Y+ G D    SM I+LP   +GL  +  KL ++   L   +   
Sbjct: 81  QYLSSYD-SLKVLKLPYQKGRDLRQFSMYILLPEAQDGLWSLAAKLNSEPEFLEKRIPTR 139

Query: 609 FSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE--PLYVSKAVQK 436
             T  +  +PKFKI    +   +L  LG+Q  F+   + LT ++ + E   L+VS    K
Sbjct: 140 QVTVGKFKLPKFKISFGFEASDLLKILGLQLPFS-SKADLTGMVGSPERHNLFVSSLFHK 198

Query: 435 AFIXXXXXXXXXXXXXXXXXXMRCARPPSPSFHADRPFLYFL-VGAERIALFIG 277
           +F+                   R A P +  F AD PFL+ +      + LFIG
Sbjct: 199 SFVQVDEEGTEAAAASAAVVSFRSA-PVTVDFVADHPFLFLIREDMTGVVLFIG 251


>04_04_0619 + 26652923-26653267,26653440-26654273
          Length = 392

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 11/154 (7%)
 Frame = -3

Query: 705 MVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVR-VTVPKFKIETEIDLLQVLPKL 529
           M++ LP + +GL  +L+      D           +V    VPKFK  +E+D    L KL
Sbjct: 230 MLVFLPIKRDGLRHLLRMAVTEPDFVMRCVPRSEQEVSPCMVPKFKFSSELDARGALAKL 289

Query: 528 GIQAIFNRQNSGLTKILDN----DEPLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMRCA 361
           G+ A F+   + L+++  +     E LYVS   QK  +                     +
Sbjct: 290 GLGAPFDPLAADLSRMAVSVNTPPERLYVSAMRQKCAVEVDEEGTTAVEATYSCCSPTYS 349

Query: 360 RPPSP-----SFHADRPFLYFLVGAERI-ALFIG 277
            P SP     SF A+ PF++ +V  E+   LF+G
Sbjct: 350 GPESPKPRPMSFVAEHPFMFAIVEYEKAQVLFLG 383


>04_04_0620 + 26656072-26656417,26656585-26657396
          Length = 385

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
 Frame = -3

Query: 705 MVIVLPNEINGLDGILQKLADGYD-LTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKL 529
           M++ LP + +GL  +L+      D +T  + +         VPKFK  +++D    L +L
Sbjct: 223 MLVFLPIKRDGLRHLLRMAVTEPDFVTRCVPRSRQIVTPCKVPKFKFSSQLDAGGALAQL 282

Query: 528 GIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFI------XXXXXXXXXXXXXXXXXX 373
           G+ A F+   + L+++  N  P  LYVS   QK  +                        
Sbjct: 283 GLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQKCAVEVDEEGTTAVEAMYSPSSPGYSPG 342

Query: 372 MRCARPPSPSFHADRPFLYFLVGAERI-ALFIG 277
            +  RPP  SF A+ PF++ +V  ++   LF+G
Sbjct: 343 YQPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLG 375


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
 Frame = -3

Query: 705 MVIVLPNEINGLDGILQKLADGYDL---TAELDKMFSTKV-----RVTVPKFKIETEIDL 550
           M+++LP+     DG L KLAD YD+   T E  K  +        R+ VPKFK   + + 
Sbjct: 271 MLLLLPDG----DGAL-KLADLYDMAVTTPEFIKKHTPAAEAPVRRLMVPKFKFSFKFEA 325

Query: 549 LQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXM 370
              + KLG+   F       + ++   + L++++   +A I                   
Sbjct: 326 KSDMRKLGVTRAF--AGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVAAASTAVVMMQ 383

Query: 369 RCARPPSPSFHADRPFLYFLV 307
           + +  P   F ADRPFL+ +V
Sbjct: 384 KGSSLPPVDFVADRPFLFAVV 404


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 8/142 (5%)
 Frame = -3

Query: 708 SMVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVR----VTVPKFKIETEIDLLQV 541
           SM I LP+E +GL  ++ K+A     ++ L     T+ R    + VP+FK+     +  V
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGV 322

Query: 540 LPKLGIQAIFNRQNSGLTKILDNDEP----LYVSKAVQKAFIXXXXXXXXXXXXXXXXXX 373
           L  +G+ A F+   + L+ + +  +     L V +   +A +                  
Sbjct: 323 LQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIR 382

Query: 372 MRCARPPSPSFHADRPFLYFLV 307
           +     P   F AD PF +F+V
Sbjct: 383 LLSMSYPE-DFVADHPFAFFVV 403


>05_06_0044 - 25150322-25151260
          Length = 312

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 8/153 (5%)
 Frame = -3

Query: 708 SMVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVRV---TVPKFKIETEIDLLQVL 538
           +M I LP++ +GL  + +KLA           + +  V V    +PKF++  +++  ++L
Sbjct: 154 AMYIYLPDDRDGLPELARKLASNPAAFLRRTIVPAQPVAVGELKIPKFEVSLKVEASRLL 213

Query: 537 PKLGIQAIF--NRQNSGLTKILDNDEPLYVSKAVQKAFIXXXXXXXXXXXXXXXXXXMRC 364
            + G+   F     NS    +LD  +   VS  + + F+                     
Sbjct: 214 REFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEEGTVAAAGTVGEIMG-F 272

Query: 363 ARPPSP--SFHADRPFLYFLV-GAERIALFIGQ 274
           A P      F AD PFL+F+V     + +F GQ
Sbjct: 273 AMPDDQIVDFVADHPFLFFIVEEVSGLVVFAGQ 305


>11_01_0767 + 6438648-6438809,6439146-6440000
          Length = 338

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
 Frame = -3

Query: 738 LEMAYEGNDASMVIVLPNEINGLDGILQKLADGYDLTAE-LDKMFSTKVRVTVPKFKIE- 565
           L++ Y     +M++ LP++ +GL G+L ++    +   E L        R  VPKFK+  
Sbjct: 160 LKLRYSLPSFAMLVFLPDDRDGLPGLLDRITASPEFVDEHLPPGCVPVGRFRVPKFKLAF 219

Query: 564 TEIDLLQVLPKLGIQA---IFNRQNSGLTKILD-NDEPLYVSKAVQKAFI 427
               +  VL  LG++    +F  + SG+    D  D  ++VS  + K  +
Sbjct: 220 CHYGIADVLRGLGLRLPFDMFAAEMSGIAVEGDGEDAAMFVSSVIHKVVV 269


>02_05_0969 +
           33165396-33165935,33166352-33166883,33166988-33167242,
           33167515-33167606,33167745-33167942,33168049-33168240,
           33168341-33168562,33168858-33169024,33169117-33169210,
           33169308-33169364,33169459-33169587,33169681-33169752,
           33170180-33170293,33170419-33170580,33170666-33170794,
           33171057-33171158,33171266-33171342,33171470-33171592,
           33171666-33172227
          Length = 1272

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = -3

Query: 780 NFKYGESHDLNAQLLEMAYEGNDASMVIVLPNEINGLDGILQKLADGYDLTAELDKMFST 601
           N +YG+  D +  ++ MA++    S   +LP  +  L  +     D +    +LD    +
Sbjct: 421 NVRYGDVWDKSFHVISMAFDKLGESSADLLPEALKNLADMQNLSDDDFSFRKQLDSCLGS 480

Query: 600 KVRVTVPK 577
            V    PK
Sbjct: 481 AVAAMGPK 488


>03_02_0556 + 9448878-9449264
          Length = 128

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 764 RATTSMRSYSKWRMKVTMPAWLSCCRTKLMAWTG 663
           RA   +  Y  WR +  +P WL C R     W G
Sbjct: 70  RAAERVVQYHPWRPRGRVPLWLPCSRGLRRRWGG 103


>11_06_0528 -
           24681630-24681751,24681911-24682025,24682134-24682193,
           24682454-24682513,24682606-24682668,24682752-24682798,
           24682884-24683049,24683136-24683228,24683306-24683370,
           24683462-24683537,24683644-24683709,24684114-24684203,
           24684359-24684421,24684548-24684670
          Length = 402

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 660 LQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNR 505
           L K+    +    L ++      V++   +I+  I+ ++ LPK G+Q +FNR
Sbjct: 161 LAKVGRQKEFEIALQRLRGKDADVSIEAAEIKEFIETIENLPKAGVQDLFNR 212


>06_03_0175 +
           17553447-17553667,17555313-17555467,17555625-17555713,
           17556253-17556376,17556920-17556989,17557345-17557441,
           17559365-17559427,17559504-17559581,17559675-17559737
          Length = 319

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -3

Query: 768 GESHDLNAQLLEMAYEGNDASMVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVRV 589
           G   DL +   ++ Y  ND  M   L N+ NGL  IL+++ DG+      D++    + +
Sbjct: 125 GVIKDLCSGSSDLYYPSND--MDPYLKNKNNGLVSILEEMEDGHPYLYPYDEIVLLGIPL 182

Query: 588 TVP 580
            VP
Sbjct: 183 CVP 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,318,589
Number of Sequences: 37544
Number of extensions: 399939
Number of successful extensions: 1136
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)