Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e17
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   7.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 335 PTDPSSTSSWALNASLCSSANTVD-EIESCFYVRHLL 228
           P  P+S+S+ +   S+CSS  + D E+E    ++ +L
Sbjct: 589 PDKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVL 625



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 20  QCSVLSFILHLCEYTNLIDC 79
           QCS+L    + C+Y  L  C
Sbjct: 109 QCSILRINRNRCQYCRLKKC 128


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 540 LPKLGI-QAIFNRQNSGLTKILDNDEPLYVSKAVQK 436
           + K GI + I N  N G   I D +  LY+  A++K
Sbjct: 34  MAKTGINKQIINDVNDGKINIEDENVQLYIECAMKK 69


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 702 PCWHRYLHTPFRVTAH*GRGSHH 770
           P +H + H P +   H G   HH
Sbjct: 314 PSYHPHQHHPSQYHPHRGSSPHH 336


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 20  QCSVLSFILHLCEYTNLIDC 79
           QCS+L    + C+Y  L  C
Sbjct: 60  QCSILRINRNRCQYCRLKKC 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,321
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)