Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e16
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 182 2e-46
01_06_0663 - 30991390-30992340 92 5e-19
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 90 2e-18
05_07_0134 - 27911920-27912762 73 2e-13
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 71 1e-12
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 67 1e-11
06_03_0219 - 18227559-18227858,18227864-18228340 35 0.083
02_01_0384 - 2781362-2782299,2782320-2782428 33 0.25
12_02_0842 - 23588826-23589198,23589548-23590203 32 0.44
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 31 1.0
06_01_0080 + 644021-645463 31 1.4
07_01_0885 + 7353926-7354770,7354845-7355487 30 1.8
07_03_1086 + 23858419-23859423,23859527-23859610 29 4.1
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 5.5
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 29 5.5
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 28 7.2
11_06_0743 + 26847652-26849424 28 9.6
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 28 9.6
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 182 bits (444), Expect = 2e-46
Identities = 102/240 (42%), Positives = 145/240 (60%), Gaps = 12/240 (5%)
Frame = -2
Query: 688 SILTSNKVVLDVYLGKDGVVAHAK-KGS-LLIDSSTIDPNVPKQIFP----IALEKGLGF 527
++L S+ VLDVY G++G++A+ G L IDSST+DP ++I L++ +
Sbjct: 48 TMLPSSAHVLDVYNGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAY 107
Query: 526 T------DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVA 365
DAPVSGGV A+ L FM GG +E + + PLL MG K +CG G+G VA
Sbjct: 108 AEKPMMLDAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVA 167
Query: 364 KLTNNMLMGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAP 185
K+ NNM M I+ + +E +G +G++ VL D+ N SSAR WS++ Y PVPG++ P
Sbjct: 168 KICNNMAMAISMLGVSEAFALGQNLGIKASVLTDIFNCSSARCWSSDTYNPVPGVMMDVP 227
Query: 184 SSRNYDGGFKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 5
SSRNYDGGF ++LM KDL+LA A G+ P G+ A ++YR + + G KDFS F+
Sbjct: 228 SSRNYDGGFTSKLMTKDLDLAMASASGVGFNCPFGSQALEIYRKLCADGCELKDFSCAFR 287
>01_06_0663 - 30991390-30992340
Length = 316
Score = 91.9 bits (218), Expect = 5e-19
Identities = 67/202 (33%), Positives = 95/202 (47%)
Frame = -2
Query: 637 GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGG 458
G +A G LL+D +T DP + +I A K DAPVSGG GA++ATL+ AGG
Sbjct: 99 GALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAKSCAAVDAPVSGGDRGARSATLSIFAGG 158
Query: 457 RKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEP 278
R PL K+MG + G G+GQ AKL N + + T + E M K GL+
Sbjct: 159 DAAVVARLAPLFKLMG-NALYMGGPGAGQRAKLGNQIAIASTMVGLVEGMVYAHKAGLDV 217
Query: 277 KVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIR 98
L+ ++ +A S S ++Y R+ GF VKDL + +
Sbjct: 218 AKWLEAISTGAAGSKSLDLY-------GKRMLERDMAAGFYVRHFVKDLGICLSECQAMG 270
Query: 97 SPIPLGAVATQLYRIVQSRGYG 32
+P A+A QLY + + G G
Sbjct: 271 LALPGLALAHQLYVSLLAHGEG 292
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 89.8 bits (213), Expect = 2e-18
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Frame = -2
Query: 544 EKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVA 365
+KG F +APVSG A++ L +A G K ++ +P V+G K F G+IG+G
Sbjct: 110 QKGGAFVEAPVSGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKM 169
Query: 364 KLTNNMLMGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAP 185
KL NM+MG A +E +++ GL P+ LLDVL+ + + P+ L +
Sbjct: 170 KLVVNMIMGSMMNALSEGLSLADNSGLSPQTLLDVLDLGAIAN-------PMFKLKGPSM 222
Query: 184 SSRNYDGGFKNELMVKDLELASGMALGIRSPI--PLGAVATQLYRIVQSRGYGQKDFSFV 11
+Y+ F + KD+ LA +ALG + + P+ A + + ++ +S G G DFS V
Sbjct: 223 LQGSYNPAFPLKHQQKDMRLA--LALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAV 280
Query: 10 FQL 2
+++
Sbjct: 281 YEV 283
>05_07_0134 - 27911920-27912762
Length = 280
Score = 73.3 bits (172), Expect = 2e-13
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Frame = -2
Query: 667 VVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQ 488
VVLD GV+A + G +L+D ++ P++ +++ A G D+PVSGG +GA+
Sbjct: 59 VVLDA---ASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGAR 115
Query: 487 NATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECM 308
+ LA +AGG + PL +G + + G GSGQ +K+ N + + + +E +
Sbjct: 116 DGALALLAGGDEAVVSWLAPLFAHLG-RPTYMGPPGSGQSSKIANQIAVAGAVVGASEAL 174
Query: 307 NMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 128
GL+ + LD ++ +A S +++ R + G + ++KDL
Sbjct: 175 AFANAAGLDAPLFLDAVSKGAAGSRVMDIF-------GERMLRREFASGGSVKYIIKDLG 227
Query: 127 LASGMALGIR--SPIPLGAVATQLYRIVQSRGYG 32
+A G +P A+ Q++ + + G G
Sbjct: 228 MALETEEGPEGAKALPGAAMFRQMFSAMAANGDG 261
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 70.9 bits (166), Expect = 1e-12
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 2/230 (0%)
Frame = -2
Query: 688 SILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD-APV 512
++L + ++V G +G G +D ST+D K I G F +
Sbjct: 112 AMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLERCDF 171
Query: 511 SGGVMGAQNATLAFMA-GGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGI 335
S +G F + + ++ + + +F G +G G KL NM+MG
Sbjct: 172 SSCTVGPMLTRYLFSRLQFQAQKSQQKMGCSSFLPQSRFFLGDVGKGADMKLVVNMVMGS 231
Query: 334 TGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFK 155
++ +E + + K+GL+P L++V++ + + P+ L + Y F
Sbjct: 232 MMVSFSEGLLLSEKVGLDPNTLVEVISQGA-------ISAPMFSLKGPSMVKAAYPTAFP 284
Query: 154 NELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 5
+ KDL LA +A + IP A A +LY++ +S G +DFS V +
Sbjct: 285 LKHQQKDLRLALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIE 334
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 67.3 bits (157), Expect = 1e-11
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 4/232 (1%)
Frame = -2
Query: 685 ILTSNKVVLD-VYLGKDGVVAHAKKGSLLIDSSTIDPN-VPKQIFPIALE-KGLGFTDAP 515
I+ +N+V + V G G V+ G+ +I SST+ P V K + E + + DAP
Sbjct: 385 IMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAP 444
Query: 514 VSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHC-GQIGSGQVAKLTNNMLMG 338
VSGGV A TL +K + S+ + + K + G G+ K+ N +L G
Sbjct: 445 VSGGVKRAAEGTLT--TNMQKLVHDCSIFYVTALSEKLYVIKGGCGAASSVKMVNQLLAG 502
Query: 337 ITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGF 158
+ + AE M G ++ L + L +++ ++ SW VP ++ +Y
Sbjct: 503 VHIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWMFGNR--VPHML-----DNDYTPYS 555
Query: 157 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQL 2
++ VKDL + S + R P+ + ++A QL+ + G+G+ D + V ++
Sbjct: 556 AVDIFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKV 607
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 34.7 bits (76), Expect = 0.083
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +3
Query: 324 AIPVMPINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMT 503
++PV+PI+ L V+L + P P C A T+RR S PP R+A P
Sbjct: 56 SLPVVPIH-LPVALLSLPRCRPPPAACAAS-TVRRPAAPSPPPASPPPPPPRLALRFPRR 113
Query: 504 PPDTGASVNPSPFS 545
PP+ PS FS
Sbjct: 114 PPELPPRRRPSRFS 127
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/74 (31%), Positives = 30/74 (40%)
Frame = +3
Query: 360 SLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSP 539
S A P P++ +T R LS ++ PA +R P +PP GAS P
Sbjct: 180 SSAIPPPATAPRFPPPRAMTARTALALSPTTSASPASPSRTRLAPPRSPPAGGASGAPRR 239
Query: 540 FSRAIGKICLGTFG 581
S A C G G
Sbjct: 240 SSSAASPSCAGVEG 253
>12_02_0842 - 23588826-23589198,23589548-23590203
Length = 342
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 180 LDGAVGTSPGTGQYTSVDQERADELFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLV 359
LDG G G+Y + ++ AD+L + +R ++PIL P S + + + L
Sbjct: 128 LDGDERGCAG-GRYDWLLEDFADKLVNDHHRRMMAAPILPPWMSSSPSSSSSPSVTLSLA 186
Query: 360 SLATCPEPICP 392
S A P P P
Sbjct: 187 SAAVAPAPAAP 197
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = -2
Query: 316 ECMNMGIKMGLEPKVLLDV-LNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMV 140
+C++MG++ G PK+ +DV L + R +V + L+ R+YDG + E M
Sbjct: 484 KCIDMGMEFGTLPKMDVDVPLTSLHIRRTLLDVPKKIDILIVIMADDRSYDG--EIEEMC 541
Query: 139 KDLELASGMALGIRSPIPLGAVATQL-YRIVQS 44
+ L + L S L VA Q+ ++V+S
Sbjct: 542 ESLRIVYVFCLPCLSKRNLKRVARQIQLKVVKS 574
>06_01_0080 + 644021-645463
Length = 480
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Frame = -2
Query: 634 VVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGR 455
+ AH ++G +ID ++ E+GL + VSGG GA+N + M GG
Sbjct: 90 LAAHLEQGDCIIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEEGARNGP-SLMPGGS 148
Query: 454 KEDFERSLP-LLKV------MGAKQFHCGQIGSGQVAKLTNN 350
E ++ LLKV G + G+ GSG K+ +N
Sbjct: 149 FEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMVHN 190
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 250 SSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 128
S+ R W E+YCPV ++ P+ + D + L + LE
Sbjct: 216 SAIRLWKVELYCPVVAMIMEHPAHQTKDEKLQFSLNYQHLE 256
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 641 RWRCGSCEKRIASDRFEYNRSECSQTDLPYSPRERAGIHR 522
R R SC SEC DL ++P AGIHR
Sbjct: 10 RRRSTSCYSDSGDSSCSEPFSECGSDDLSFTPAAAAGIHR 49
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 494 THDSSRYRCICESQPFL*GYREDLFGNIRIYC 589
+H +S Y + E L +DL GNIR+YC
Sbjct: 370 SHAASGYHKVLEENRKLYNQIQDLRGNIRVYC 401
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +1
Query: 616 FSHEPQRHLCPGTRRARLYCWSIWKRPRRLHQRLQQWSWL 735
F E + G A L WS W R R +H R Q W WL
Sbjct: 68 FMQEEGGKVFTGRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 393 QWNCLAPITLRRG-RDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 551
+W+ AP+ G R+ + L PP A P PP A PSPF A
Sbjct: 236 RWSRAAPLPPHNGERERPRLVLDPPKRDASAT---PTPPPAEAARSRPSPFGAA 286
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 664 RLYCWSIWKRPRRLHQRLQQWSWLAS-LRSWPLRS 765
R + W+ KR RL +RL+Q W+A+ +R + RS
Sbjct: 94 RRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRS 128
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +2
Query: 437 PFEVFFTTSGHEGQGSVLSTHDSSRYRCI--CESQPFL*GYREDLFGNIRIYCTRIDQKR 610
P++ + H GQG+ + H+ + + I +S+ + G R+ L + T +D+
Sbjct: 1161 PYDQYTEGCSHSGQGTAIPPHEHAMQKSIPRLKSKLHIEGSRDQLRQWTELLSTHLDELT 1220
Query: 611 SFFRMSHNAIFAQVH---VEHDFIAGQYG 688
+ +N+ + + EHD + YG
Sbjct: 1221 ITDPLFYNSKYLEEESTVSEHDSLESIYG 1249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,716,005
Number of Sequences: 37544
Number of extensions: 635908
Number of successful extensions: 2072
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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