Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e14
         (213 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.54 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    19   6.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    19   6.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    19   6.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   8.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 0.54
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 67  FLLRFDFNQSCSGFCSDSFYGFRFNNHNF 153
           F L +++  + S       YGF FN+ NF
Sbjct: 369 FPLEYEYVLAVSNRIQKVIYGFDFNDVNF 397


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 109 CSDSFYGFRFNNHNFFCNYF 168
           C D FY    N+ +   +YF
Sbjct: 91  CDDKFYDCLKNSADTISSYF 110


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 109 CSDSFYGFRFNNHNFFCNYF 168
           C D FY    N+ +   +YF
Sbjct: 96  CDDKFYDCLKNSADTISSYF 115


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 109 CSDSFYGFRFNNHNFFCNYF 168
           C D FY    N+ +   +YF
Sbjct: 96  CDDKFYDCLKNSADTISSYF 115


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/27 (29%), Positives = 10/27 (37%)
 Frame = +1

Query: 70  LLRFDFNQSCSGFCSDSFYGFRFNNHN 150
           L  FD        C D   GF +  H+
Sbjct: 57  LAEFDGTTVLCRVCGDKASGFHYGVHS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,882
Number of Sequences: 438
Number of extensions: 604
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)