Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e12
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0632 - 5069425-5069441,5070656-5070809,5070889-5071050,507...    29   6.2  
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360...    29   6.2  
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428...    28   8.2  

>11_01_0632 -
           5069425-5069441,5070656-5070809,5070889-5071050,
           5071270-5072199
          Length = 420

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +2

Query: 476 IVENIQCSPVDKTL--ILKFLCTCNTKSS 556
           IVE ++C  VD+ +  +LKFLC CN + S
Sbjct: 391 IVE-VKCKVVDENVSKVLKFLCACNIRFS 418


>03_01_0465 +
           3598815-3598972,3599949-3600711,3601073-3601159,
           3601263-3601346,3601428-3601514,3601608-3601694,
           3602239-3602292,3602380-3602471,3602564-3602678,
           3602763-3602913,3603010-3603155
          Length = 607

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 414 KCAGCFKISPPKLKIQHCTAMHFKDQFK 331
           +C GC K   P  K  HC+A  F D ++
Sbjct: 76  QCLGCLKSKIPVAKSYHCSAKCFSDAWQ 103


>10_07_0177 -
           13841148-13841267,13841569-13841645,13842710-13842860,
           13842942-13843056,13843145-13843236,13843317-13843370,
           13843849-13843935,13844023-13844109,13844191-13844274,
           13844359-13844445,13844793-13845549,13846491-13846648
          Length = 622

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 414 KCAGCFKISPPKLKIQHCTAMHFKDQFK 331
           +C GC K   P  K  HC+A  F D ++
Sbjct: 76  QCLGCVKSKIPVAKSYHCSAKCFSDAWQ 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,982
Number of Sequences: 37544
Number of extensions: 298730
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)