Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e11
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    42   1e-04
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    25   9.7  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   9.7  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.7  

>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -3

Query: 811 AKPTHGQTVRLAPPLVITEAQIRDGADIIR 722
           AKPTHG  +R +PPLVITE  +  G ++I+
Sbjct: 389 AKPTHGNIIRFSPPLVITEEDLMKGIEVIK 418


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 802 THGQTVRLAPPLVITEAQIRDGADIIRNVFQS 707
           T G  V LAPP +IT  QI +  + +     S
Sbjct: 422 TRGDHVLLAPPYIITREQIDELVEALSKTITS 453


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 312 FILIEQINQEIVTINDSDIVD 250
           F+LI ++  E+  +N  DIVD
Sbjct: 925 FVLIHELKNELTPVNGLDIVD 945


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 683 IDSYLFLKALEDVPDDI 733
           + SY F+K +E +PD++
Sbjct: 620 VSSYFFIKCVEQIPDEL 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,602
Number of Sequences: 5004
Number of extensions: 60975
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)