Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e11
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475           33   0.27 
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195...    33   0.36 
05_05_0147 + 22715144-22715444,22716245-22716407,22716484-227165...    28   7.7  

>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
          Length = 465

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 796 GQTVRLAPPLVITEAQIRDGADIIRN 719
           G  VRL PPL+I+E ++   A++IR+
Sbjct: 430 GNVVRLVPPLIISEKELEQAAEVIRD 455


>03_05_0467 -
           24615243-24615384,24619166-24619450,24619516-24619596,
           24619807-24619904,24620038-24620190,24620705-24620760,
           24620844-24621003,24621416-24621646,24621795-24621903,
           24622642-24622799
          Length = 490

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 811 AKPTHGQTVRLAPPLVITEAQIRDGADIIRNVFQ 710
           AKPTH   +RLAPPL I+  ++ + +    +V +
Sbjct: 427 AKPTHDTIIRLAPPLSISPEELAEASKAFSDVLE 460


>05_05_0147 +
           22715144-22715444,22716245-22716407,22716484-22716532,
           22716626-22716739,22716812-22717234,22717307-22717693,
           22717777-22717872,22717978-22718093,22718137-22718272,
           22718392-22718480,22718586-22718736,22719057-22719185,
           22719276-22719354,22719435-22719544
          Length = 780

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 378 TSFLSIITNVLNLQKKGGNLIYNHNQI 458
           T F+SI+ ++LN  K  GN+I  HN +
Sbjct: 658 TPFISILKDLLNNIKSNGNVIEMHNYL 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,302
Number of Sequences: 37544
Number of extensions: 300056
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)