Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e11
         (813 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY047517-1|AAK77249.1|  431|Drosophila melanogaster GH01984p pro...    48   1e-05
AE014296-3193|AAF49127.1|  431|Drosophila melanogaster CG8782-PA...    48   1e-05
AY089579-1|AAL90317.1|  911|Drosophila melanogaster RE11181p pro...    31   2.5  
AE014297-3664|AAF56360.2|  911|Drosophila melanogaster CG31121-P...    31   2.5  
AE014297-3663|AAF56359.2|  911|Drosophila melanogaster CG31121-P...    31   2.5  
AY118454-1|AAM49823.1|  489|Drosophila melanogaster AT17310p pro...    29   10.0 
AY075213-1|AAL68080.1|  489|Drosophila melanogaster AT15089p pro...    29   10.0 

>AY047517-1|AAK77249.1|  431|Drosophila melanogaster GH01984p
           protein.
          Length = 431

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = -3

Query: 811 AKPTHGQTVRLAPPLVITEAQIRDGADIIRNVFQS 707
           AKPTHG  +R APPLVI E Q+R+  DIIR    S
Sbjct: 396 AKPTHGDIIRFAPPLVINETQMRESIDIIRKTILS 430


>AE014296-3193|AAF49127.1|  431|Drosophila melanogaster CG8782-PA
           protein.
          Length = 431

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = -3

Query: 811 AKPTHGQTVRLAPPLVITEAQIRDGADIIRNVFQS 707
           AKPTHG  +R APPLVI E Q+R+  DIIR    S
Sbjct: 396 AKPTHGDIIRFAPPLVINETQMRESIDIIRKTILS 430


>AY089579-1|AAL90317.1|  911|Drosophila melanogaster RE11181p
           protein.
          Length = 911

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 20  HRNCV*IKLIIRF*IYTINMYKYAIRFATRTL*LRKYTKILYFA*FSFFGILKSLVICIF 199
           + +CV + +     + TI   +   R A R + L  YT+ LY    S  G+  SL I + 
Sbjct: 656 YHHCVMVLVYWPLVMLTIRDTQEDRRHAERDIRLGLYTRSLYIIVQSLLGLFPSLCIWLA 715

Query: 200 SLTPHHLISG 229
            L P H ++G
Sbjct: 716 YLLPAHSMAG 725


>AE014297-3664|AAF56360.2|  911|Drosophila melanogaster CG31121-PB,
           isoform B protein.
          Length = 911

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 20  HRNCV*IKLIIRF*IYTINMYKYAIRFATRTL*LRKYTKILYFA*FSFFGILKSLVICIF 199
           + +CV + +     + TI   +   R A R + L  YT+ LY    S  G+  SL I + 
Sbjct: 656 YHHCVMVLVYWPLVMLTIRDTQEDRRHAERDIRLGLYTRSLYIIVQSLLGLFPSLCIWLA 715

Query: 200 SLTPHHLISG 229
            L P H ++G
Sbjct: 716 YLLPAHSMAG 725


>AE014297-3663|AAF56359.2|  911|Drosophila melanogaster CG31121-PA,
           isoform A protein.
          Length = 911

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 20  HRNCV*IKLIIRF*IYTINMYKYAIRFATRTL*LRKYTKILYFA*FSFFGILKSLVICIF 199
           + +CV + +     + TI   +   R A R + L  YT+ LY    S  G+  SL I + 
Sbjct: 656 YHHCVMVLVYWPLVMLTIRDTQEDRRHAERDIRLGLYTRSLYIIVQSLLGLFPSLCIWLA 715

Query: 200 SLTPHHLISG 229
            L P H ++G
Sbjct: 716 YLLPAHSMAG 725


>AY118454-1|AAM49823.1|  489|Drosophila melanogaster AT17310p
           protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 380 FFPIYNNQCT*SAKKRWQPHIQS 448
           F P+YNNQ   S +++ QPH QS
Sbjct: 237 FLPLYNNQQQQSQQQQQQPHQQS 259


>AY075213-1|AAL68080.1|  489|Drosophila melanogaster AT15089p
           protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 380 FFPIYNNQCT*SAKKRWQPHIQS 448
           F P+YNNQ   S +++ QPH QS
Sbjct: 237 FLPLYNNQQQQSQQQQQQPHQQS 259


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,933,371
Number of Sequences: 53049
Number of extensions: 573604
Number of successful extensions: 894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)