Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e11
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical p...    40   0.002
U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical p...    40   0.002
U80029-5|AAB37585.2|  199|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AC025726-10|AAK73915.3|  344|Caenorhabditis elegans Hypothetical...    29   4.0  
AF043703-2|AAK21501.2|   68|Caenorhabditis elegans Hypothetical ...    28   6.9  
U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical
           protein C16A3.10a protein.
          Length = 422

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -3

Query: 811 AKPTHGQTVRLAPPLVITEAQIRDGADIIRNVFQSFQK 698
           AK THG  +R APPL I + Q+   ADII      F K
Sbjct: 383 AKNTHGDIIRFAPPLCINKEQVEQAADIIIKTVTDFAK 420


>U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical
           protein C16A3.10b protein.
          Length = 357

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -3

Query: 811 AKPTHGQTVRLAPPLVITEAQIRDGADIIRNVFQSFQK 698
           AK THG  +R APPL I + Q+   ADII      F K
Sbjct: 318 AKNTHGDIIRFAPPLCINKEQVEQAADIIIKTVTDFAK 355


>U80029-5|AAB37585.2|  199|Caenorhabditis elegans Hypothetical
           protein T20D4.12 protein.
          Length = 199

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 439 MRLPPFFCRLSTLVIIDRKEVHSIKIKCN 353
           MR+PPF  +   L + D+KEV  +K +C+
Sbjct: 43  MRIPPFINKTELLDMNDKKEVKELKEECH 71


>U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical
           protein F54H5.3 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 738 PSRICASVMTSGGARRTVCPCVGF 809
           P RI   V T+G  R TVCP  GF
Sbjct: 53  PCRIAFRVRTNGPTRYTVCPSKGF 76


>AC025726-10|AAK73915.3|  344|Caenorhabditis elegans Hypothetical
           protein Y71G12B.16 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 193 YFFVNATSPNLRLEILTSNVNNVTVI 270
           YF V  T+ N+R E LT+ V  VTV+
Sbjct: 75  YFLVQVTNRNVRGEALTTTVTKVTVL 100


>AF043703-2|AAK21501.2|   68|Caenorhabditis elegans Hypothetical
           protein W10C8.3 protein.
          Length = 68

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 535 SLRFIFITIIMLYVFIINNTCLKVF 461
           SLR    T+I+ Y + +NN CL +F
Sbjct: 29  SLRATIATLIVCYAWWLNNICLSIF 53


>U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical
           protein T09B4.8 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 799 HGQTVRLAPPLVITEAQIRDGADIIRNVFQSFQ 701
           HG  +R+ PP+ IT+  +    DII    + ++
Sbjct: 412 HGNVLRIKPPMCITKKDVDFAVDIIAKSIKQYK 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,967
Number of Sequences: 27780
Number of extensions: 334205
Number of successful extensions: 583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)