Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e09
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    34   0.17 
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500...    32   0.67 
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   6.2  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   6.2  
03_02_0243 - 6744164-6744415,6744518-6745135                           29   6.2  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 266 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 406
           D +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>08_02_1430 -
           27048055-27048408,27049674-27049841,27049927-27050042,
           27050153-27050305,27050850-27050993,27051052-27051211,
           27051332-27051970
          Length = 577

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 8/154 (5%)
 Frame = -2

Query: 837 YTQEAXHFVGXKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPH--GYKVRQPRLN 664
           + ++A   V   +   +VDK V  F H D D     + S +EL    H  G  V +P + 
Sbjct: 398 FKKKALGVVARNLPGEEVDKYVQMFHHMDKD--KNGHLSLDELLEGLHINGQPVPEPEIR 455

Query: 663 ------HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKV 502
                       T+D    V  +  +K     +Y    F +  +D    F ELD   ++V
Sbjct: 456 MLLEAADTDGNGTLDCDEFVTVSVHLKKMSNDEYLAAAFNYFDKDG-SGFIELDELREEV 514

Query: 501 NPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQG 400
            P +  I     D    K+  +   E   ++  G
Sbjct: 515 GPNEQAILEILRDVDTDKDGRISYQEFELMMKSG 548


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 306 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 208
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 289 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 417
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>03_02_0243 - 6744164-6744415,6744518-6745135
          Length = 289

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 604 DDGVSGNIRFNIDCHSERLVV 666
           D  VSG+ RF++ C  ERLVV
Sbjct: 87  DVRVSGSARFDVQCRGERLVV 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,964,714
Number of Sequences: 37544
Number of extensions: 390060
Number of successful extensions: 1063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)