Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e09
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    32   0.60 
U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 285 EPTPK-ESEPFKSVVPDNKPFGYPFDRPV-LPQYFKQP 178
           +PTPK +SEPF   +P +KP   PF  P+  P+   +P
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKP 44



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = -2

Query: 300 FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRP-VLPQYFKQP---NMFFKKVLVYXEGEL 133
           F  P   +  +SEPF S +P  KP   P  +P  +P++  +P    M F K +   + + 
Sbjct: 17  FPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKP 76

Query: 132 FPYLFNIPHYTP 97
           FP     P   P
Sbjct: 77  FPKPMLFPKPMP 88


>U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical
           protein F56C9.8 protein.
          Length = 182

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 294 YPYEPTPKESEPFKSVV--PDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYXEGELFPYL 121
           +PY P P ++  + + +  P N     P   P + QY  QP  +    LV    + +   
Sbjct: 82  FPYNPAPTQNYDYNAPIRTPVNPTSFTPV--PSVTQYSTQPQQYSNVPLVTPTTQQYIQN 139

Query: 120 FNIPHYTPD 94
            +IP Y PD
Sbjct: 140 QSIPQYAPD 148


>U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical
           protein R11G1.2 protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 351 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQ-YFKQPN 175
           L++    Y G   +     Y    T  +S+ F   VP  KP GY  D P+ P+ Y     
Sbjct: 91  LLMDSDEYCGLSIENVYTRYITSETIDQSDTFGYNVP--KPIGYKGDEPIWPRSYGYSAE 148

Query: 174 MFF 166
           MFF
Sbjct: 149 MFF 151


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 279 TPKESEPFKSVVPDNKPFGYPFDRPVLPQ 193
           TPK  +  +  VP N+P    F RPV+P+
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPK 156


>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = -2

Query: 408 DQGKIPTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYP-YEPTPKESEPFKSVVPDNK 232
           D   I  D+F+  D+ P    +P   Y+   F  +    P Y P P   +P     P   
Sbjct: 8   DPDSISPDVFDPYDSTP---YVPDA-YNPDMFNPYNNTVPDYIPVPSRPDPQSIYFPT-- 61

Query: 231 PFGYPFDRPVLPQYFKQPNMFFKKVLVYXEGELFPYLFNIPHYTPDK 91
             G    RP    Y K   +    VL++  G+LF ++ N+   TPD+
Sbjct: 62  VIGNANRRPFAGLYVKI--LLGCLVLLFFFGDLFYFILNVKVTTPDQ 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,411
Number of Sequences: 27780
Number of extensions: 360207
Number of successful extensions: 1079
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)