Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16e05
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    28   1.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    28   2.0  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    28   2.0  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   2.6  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   2.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   7.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.9  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/88 (25%), Positives = 39/88 (44%)
 Frame = -2

Query: 270 LKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWE 91
           LK LE   E   K+    ++ ++K+S+  ET  N   +       +V+ HEA        
Sbjct: 119 LKKLESHIEALRKVY---DDLYKKFSSEKETLLNSVKRA------KVSYHEACDDLESAR 169

Query: 90  QFKTSSPETVQRQNIKIIEPKRFNKRNR 7
           Q      E   ++N+K+ E    +K+N+
Sbjct: 170 QKNDKYREQKTQRNLKLSESDMLDKKNK 197


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 210  SHRKYSNSFETAYNKFSKIYTNWLREVN 127
            SH      FE   +  SKI+  W+R+VN
Sbjct: 1220 SHESVQTIFEMIESHLSKIFFEWVRQVN 1247


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 747 AYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADI-DFYNMLIKKRCL 589
           A S  P++K F  ++P+  +   A+     T+H     ADI D +N  ++   L
Sbjct: 353 AKSTSPELKVFDTVMPVALSPKPAQKPPSPTIHTKAALADILDIFNQPLRSESL 406


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/61 (16%), Positives = 24/61 (39%)
 Frame = -2

Query: 219 NENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKTSSPETVQRQNIKI 40
           N+N   ++ N+F   +N+    ++      N      + +PWE     +      Q+  +
Sbjct: 649 NQNEKEEWENTFNVMFNRVKGHFSTVFPPPNARAYADESYPWEFLAACATAASSEQHFTL 708

Query: 39  I 37
           +
Sbjct: 709 V 709


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 704 SICVNVLMSGLTE*ALISSXKSSCPPITVNLS 799
           SI   +L  G+T   L ++ KSSC P+ +N+S
Sbjct: 57  SIRYTILQIGITFIYLQNNGKSSCIPVNINVS 88


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 441 KEDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVP-VSDL 274
           +E++++    +R  Q ++   I+  + +   + +  D V YV+N VKD  +P VSD+
Sbjct: 654 QENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHD-DLVQYVINNVKDRGIPLVSDV 709


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 282 SDLF-LKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQ 106
           SDL  L++  DF  +    +  ++N+  +Y   + T Y++ +KI    L E    E L++
Sbjct: 43  SDLSKLQSTNDFESREDLSLTSDDNNDPEYVMCYNTVYHQKTKINDKLLSET---EQLRK 99

Query: 105 EHPWEQFKTSSPETVQ 58
            +P E      P  V+
Sbjct: 100 IYPLESRVFPKPTIVK 115


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -2

Query: 684  TEAENKLLHTMHNMKIRADID-FYNM-----LIKKRCLRLDY 577
            ++  NK+L T+H   +  ++D  + M     L+KK C R DY
Sbjct: 1011 SDEANKILETLHTSGVLDELDESFAMKEAKTLVKKTCARTDY 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,743
Number of Sequences: 5004
Number of extensions: 64289
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)