Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e05
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0454 - 3484319-3486265 39 0.004
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 33 0.22
01_01_0470 - 3464634-3466520 33 0.39
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 31 1.2
01_06_0937 + 33175966-33178020 31 1.2
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 31 1.6
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 31 1.6
04_01_0106 + 1102880-1105691,1105781-1105806 31 1.6
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110... 30 2.1
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 30 2.7
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 30 2.7
03_02_0102 + 5637469-5639064 29 3.6
02_05_1278 - 35416451-35416458,35416777-35416969,35416970-354170... 29 3.6
01_05_0680 - 24238840-24241242 29 3.6
04_03_0515 + 16698589-16701066 29 4.8
10_08_0419 - 17783202-17784938 29 6.3
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 6.3
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 29 6.3
07_03_1106 + 24017601-24019955 28 8.3
>03_01_0454 - 3484319-3486265
Length = 648
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 771 EDFXEEMSAYSVKPDIKTFTQMLP--LLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKK 598
E EM V PD+ TFT ++ ++ + +L TM N ++R DI YN LI
Sbjct: 386 EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 445
Query: 597 RCLRLDYD 574
C + D D
Sbjct: 446 MCRQGDLD 453
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -2
Query: 771 EDFXEEMSAYSVKPDIKTFTQMLP--LLDNTTEAENKLLHTMHNMKIRADIDFYNMLI 604
+ F ++M V PD+ T+ ++ + ++ KLL+ M K++ D+ YNMLI
Sbjct: 526 QKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLI 583
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -2
Query: 771 EDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMH--NMKIRADIDFYNMLIKK 598
E M PD+KTF M+ L + + E L H H M + AD Y ++++
Sbjct: 320 EALFASMIVRGTNPDVKTFNVMMTLFASKGDVEGVLKHYYHIGKMGLSADTVSYGIVLRV 379
Query: 597 RCLR 586
C R
Sbjct: 380 LCER 383
>01_01_0470 - 3464634-3466520
Length = 628
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -2
Query: 768 DFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAE--NKLLHTMHNMKIRADIDFYNMLIKKR 595
+ EEM + V PD++TF+ ++ L E + ++LL + +++ D Y++LIK
Sbjct: 472 ELLEEMMSRGVLPDLQTFSGLMEHLAGAGELKGVHRLLGLVRQCELQPDGYMYSVLIKVY 531
Query: 594 C 592
C
Sbjct: 532 C 532
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = -2
Query: 804 LQDKFTVIGGQED---FXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENK--LLHTMHNMK 640
L D +T G E +EM A VKP F+++L + E + +L MH
Sbjct: 333 LVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASG 392
Query: 639 IRADIDFYNMLI 604
+R D FYN++I
Sbjct: 393 VRPDRHFYNVMI 404
>01_06_0937 + 33175966-33178020
Length = 684
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 738 VKPDIKTFTQMLPLLDNTTEAEN--KLLHTMHNMKIRADIDFYNMLIKKRCLRLDYD 574
V PDI T++ ++ +L E K+ H + ++ +R YN ++ C R + D
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTD 614
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 768 DFXEEMSAYSVKPDIKTFTQMLPLLDNT--TEAENKLLHTMHNMKIRADIDFYNMLIKKR 595
+ ++M + PDI T+ ++ L A LL +HN + DI YN+LI
Sbjct: 577 ELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWH 636
Query: 594 C 592
C
Sbjct: 637 C 637
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -2
Query: 756 EMSAYSVKPDIKTFTQMLPLLDNTTEAE--NKLLHTMHNMKIRADIDFYNMLIKKRCL 589
+M +KPD+ T+T ++ L + E + + LL M + I+ I YN+L+ C+
Sbjct: 520 DMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -2
Query: 816 EVHSLQDKFTVIGGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKI 637
EV + D+F + GQ+ S + P K+ L EA+N+ L + N+K+
Sbjct: 83 EVEDILDEFVYLFGQKQTASLKSLRNFFPKSKSMMHWQRLAAELKEAQNR-LQNLRNLKV 141
Query: 636 RADID 622
+ +ID
Sbjct: 142 QYNID 146
>08_02_0603 +
19208177-19210033,19210581-19210618,19210937-19211059,
19211471-19211852
Length = 799
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 759 EEMSAYSVKPDIKTFTQMLPLLDNTTEAEN--KLLHTMHNMKIRADIDFYNMLIKKRCLR 586
E+M + + P I T+ ++ L N ++ ++++++ N ++ D YN LI C R
Sbjct: 539 EKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYR 598
Query: 585 LDYD 574
+ D
Sbjct: 599 GNID 602
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 771 EDFXEEMSAYSVKPDIKTFTQMLP--LLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKK 598
E + M VKPDI T++ ++ L + KLL +M ++ ++ D YN LI
Sbjct: 499 EKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLING 558
Query: 597 RC 592
C
Sbjct: 559 YC 560
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = -2
Query: 300 DEKVPVS-------DLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNW 142
DE VPVS D ++ + + +E C ++ + EN H + +NS E + +I T+
Sbjct: 297 DEYVPVSPDEEMDDDGSVQQMRENDELCKQLQRLEENGHEQAANSAEGCLKTYKEIETHT 356
Query: 141 LREVNIHEALKQEHPWEQF 85
+ + L + +E F
Sbjct: 357 ALAGSTYSELSEPPSFEAF 375
>03_02_0102 + 5637469-5639064
Length = 531
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 759 EEMSAYSVKPDIKTFTQM---LPLLDNTTEAENKLLHTMHNMKIRADIDFYNMLIK 601
+EM + PD+ T+T + L L+ +A++ LL MH + D+ YN I+
Sbjct: 275 DEMREKDISPDVITYTSLIGGLGLIGQPDKAKH-LLKEMHELGCYPDVPAYNTAIR 329
>02_05_1278 -
35416451-35416458,35416777-35416969,35416970-35417056,
35417851-35417892,35418542-35418617,35418954-35421589
Length = 1013
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -2
Query: 771 EDFXEEMSAYSVKPDIKTFTQMLP--LLDNTTEAENKLLHTMHNMKIRADIDFYNMLI 604
+ F EM +KPD T+ M+ T KLLH M I+ ++ YN L+
Sbjct: 574 KSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLV 631
>01_05_0680 - 24238840-24241242
Length = 800
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 756 EMSAYSVKPDIKTFTQMLPLLDNTTEAEN--KLLHTMHNMKIRADIDFYNMLI 604
EM A PD TFT + L + ++ KLL M+ + IR ++ YNMLI
Sbjct: 691 EMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLI 743
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 759 EEMSAYSVKPDIKTFTQMLPL---LDNTTEAENKLLHTMHNMKIRADIDFYNMLIKKRCL 589
E+M+ V PDI TF+ ++ L +A K H M + + D Y+ LI+ +C
Sbjct: 423 EDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNH-MIDTGVPPDTAVYSCLIQGQCN 481
Query: 588 RLD 580
R D
Sbjct: 482 RRD 484
>10_08_0419 - 17783202-17784938
Length = 578
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -2
Query: 804 LQDKFTVIGGQED---FXEEMSAYSVKPDIKTFTQMLPLLDNTTE--AENKLLHTMHNMK 640
L D + +G ED E M+ + P++ T+ ++ + + + + LL M
Sbjct: 375 LIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG 434
Query: 639 IRADIDFYNMLIKKRCLR 586
I AD+ YN+LI C +
Sbjct: 435 IEADVVTYNVLIGALCCK 452
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 141 LREVNIHEALKQEHPWEQFKTSSPETVQR 55
LR + I +A K PW + + +PET+QR
Sbjct: 98 LRRMRISKANKGNTPWNKGRKHTPETLQR 126
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -2
Query: 315 LNIVKDEKVPVSDLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFS--KIYTNW 142
L + D+K +S+ F K +E EKC I Q E + ++FS Y +W
Sbjct: 363 LGLETDDKTALSEKFRKRIESRKEKCPSHILQVIEEELTKLQLLEASSSEFSVTSNYLDW 422
Query: 141 L 139
L
Sbjct: 423 L 423
>07_03_1106 + 24017601-24019955
Length = 784
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 759 EEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLH--TMHNMKIRADIDFYNMLIKKRCLR 586
+EM +KPD+ T+T ++ LD + + ++ M + ++ YN LIK +R
Sbjct: 337 QEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,171
Number of Sequences: 37544
Number of extensions: 324513
Number of successful extensions: 843
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -