Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e05
(862 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC103661-1|AAI03662.1| 482|Homo sapiens PTCD1 protein protein. 95 2e-19
BC103502-1|AAI03503.1| 700|Homo sapiens pentatricopeptide repea... 95 2e-19
BC103495-1|AAI03496.1| 700|Homo sapiens pentatricopeptide repea... 95 2e-19
BC003688-1|AAH03688.2| 595|Homo sapiens PTCD1 protein protein. 95 2e-19
AB014532-1|BAA31607.1| 727|Homo sapiens KIAA0632 protein protein. 95 2e-19
BC080580-1|AAH80580.1| 700|Homo sapiens pentatricopeptide repea... 94 7e-19
BC005399-1|AAH05399.1| 240|Homo sapiens LRRIQ1 protein protein. 32 3.1
U54999-1|AAB40385.1| 677|Homo sapiens LGN protein protein. 31 4.1
CR456786-1|CAG33067.1| 677|Homo sapiens GPSM2 protein. 31 4.1
BC027732-1|AAH27732.1| 677|Homo sapiens G-protein signaling mod... 31 4.1
AY136740-1|AAN01266.1| 677|Homo sapiens LGN protein protein. 31 4.1
AL449266-9|CAI14361.1| 684|Homo sapiens G-protein signalling mo... 31 4.1
AK022365-1|BAB14022.1| 534|Homo sapiens protein ( Homo sapiens ... 31 5.4
BC093088-1|AAH93088.1| 294|Homo sapiens LRRIQ1 protein protein. 31 7.1
AK056509-1|BAE46616.1| 753|Homo sapiens protein ( Homo sapiens ... 31 7.1
AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dy... 31 7.1
AB209115-1|BAD92352.1| 1065|Homo sapiens restin isoform a varian... 30 9.4
>BC103661-1|AAI03662.1| 482|Homo sapiens PTCD1 protein protein.
Length = 482
Score = 95.5 bits (227), Expect = 2e-19
Identities = 62/240 (25%), Positives = 117/240 (48%)
Frame = -2
Query: 798 DKFTVIGGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADIDF 619
D+ +IGG E F +M+ + +PDI+T T + ++++ + AE+ LL + ++ AD+ F
Sbjct: 245 DRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTF 304
Query: 618 YNMLIKKRCLRLDYDXXXXXXXXXXXXXXXXXRLYPDNKKKRLNLNIMSYGVLAMACKTK 439
+N L++K+ D + L P K+ L N+ ++ LA+ C
Sbjct: 305 FNTLVRKKSKLGDLEGAKA--------------LLPVLAKRGLVPNLQTFCNLAIGCHRP 350
Query: 438 EDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVPVSDLFLKNL 259
+D LL DM++ Q+ N I AL+ I + Y++ +L +K +VPV+++ ++ L
Sbjct: 351 KDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQL 410
Query: 258 EDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKT 79
E F + + + N++ + F Y WL + A + HPW++F+T
Sbjct: 411 E-FAAQYPPTFDRYQGK-----NTYLEKIDGFRAYYKQWL---TVMPAEETPHPWQKFRT 461
>BC103502-1|AAI03503.1| 700|Homo sapiens pentatricopeptide repeat
domain 1 protein.
Length = 700
Score = 95.5 bits (227), Expect = 2e-19
Identities = 62/240 (25%), Positives = 117/240 (48%)
Frame = -2
Query: 798 DKFTVIGGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADIDF 619
D+ +IGG E F +M+ + +PDI+T T + ++++ + AE+ LL + ++ AD+ F
Sbjct: 463 DRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTF 522
Query: 618 YNMLIKKRCLRLDYDXXXXXXXXXXXXXXXXXRLYPDNKKKRLNLNIMSYGVLAMACKTK 439
+N L++K+ D + L P K+ L N+ ++ LA+ C
Sbjct: 523 FNTLVRKKSKLGDLEGAKA--------------LLPVLAKRGLVPNLQTFCNLAIGCHRP 568
Query: 438 EDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVPVSDLFLKNL 259
+D LL DM++ Q+ N I AL+ I + Y++ +L +K +VPV+++ ++ L
Sbjct: 569 KDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQL 628
Query: 258 EDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKT 79
E F + + + N++ + F Y WL + A + HPW++F+T
Sbjct: 629 E-FAAQYPPTFDRYQGK-----NTYLEKIDGFRAYYKQWL---TVMPAEETPHPWQKFRT 679
>BC103495-1|AAI03496.1| 700|Homo sapiens pentatricopeptide repeat
domain 1 protein.
Length = 700
Score = 95.5 bits (227), Expect = 2e-19
Identities = 62/240 (25%), Positives = 117/240 (48%)
Frame = -2
Query: 798 DKFTVIGGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADIDF 619
D+ +IGG E F +M+ + +PDI+T T + ++++ + AE+ LL + ++ AD+ F
Sbjct: 463 DRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTF 522
Query: 618 YNMLIKKRCLRLDYDXXXXXXXXXXXXXXXXXRLYPDNKKKRLNLNIMSYGVLAMACKTK 439
+N L++K+ D + L P K+ L N+ ++ LA+ C
Sbjct: 523 FNTLVRKKSKLGDLEGAKA--------------LLPVLAKRGLVPNLQTFCNLAIGCHRP 568
Query: 438 EDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVPVSDLFLKNL 259
+D LL DM++ Q+ N I AL+ I + Y++ +L +K +VPV+++ ++ L
Sbjct: 569 KDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQL 628
Query: 258 EDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKT 79
E F + + + N++ + F Y WL + A + HPW++F+T
Sbjct: 629 E-FAAQYPPTFDRYQGK-----NTYLEKIDGFRAYYKQWL---TVMPAEETPHPWQKFRT 679
>BC003688-1|AAH03688.2| 595|Homo sapiens PTCD1 protein protein.
Length = 595
Score = 95.5 bits (227), Expect = 2e-19
Identities = 62/240 (25%), Positives = 117/240 (48%)
Frame = -2
Query: 798 DKFTVIGGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADIDF 619
D+ +IGG E F +M+ + +PDI+T T + ++++ + AE+ LL + ++ AD+ F
Sbjct: 358 DRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTF 417
Query: 618 YNMLIKKRCLRLDYDXXXXXXXXXXXXXXXXXRLYPDNKKKRLNLNIMSYGVLAMACKTK 439
+N L++K+ D + L P K+ L N+ ++ LA+ C
Sbjct: 418 FNTLVRKKSKLGDLEGAKA--------------LLPVLAKRGLVPNLQTFCNLAIGCHRP 463
Query: 438 EDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVPVSDLFLKNL 259
+D LL DM++ Q+ N I AL+ I + Y++ +L +K +VPV+++ ++ L
Sbjct: 464 KDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQL 523
Query: 258 EDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKT 79
E F + + + N++ + F Y WL + A + HPW++F+T
Sbjct: 524 E-FAAQYPPTFDRYQGK-----NTYLEKIDGFRAYYKQWL---TVMPAEETPHPWQKFRT 574
>AB014532-1|BAA31607.1| 727|Homo sapiens KIAA0632 protein protein.
Length = 727
Score = 95.5 bits (227), Expect = 2e-19
Identities = 62/240 (25%), Positives = 117/240 (48%)
Frame = -2
Query: 798 DKFTVIGGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADIDF 619
D+ +IGG E F +M+ + +PDI+T T + ++++ + AE+ LL + ++ AD+ F
Sbjct: 490 DRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTF 549
Query: 618 YNMLIKKRCLRLDYDXXXXXXXXXXXXXXXXXRLYPDNKKKRLNLNIMSYGVLAMACKTK 439
+N L++K+ D + L P K+ L N+ ++ LA+ C
Sbjct: 550 FNTLVRKKSKLGDLEGAKA--------------LLPVLAKRGLVPNLQTFCNLAIGCHRP 595
Query: 438 EDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVPVSDLFLKNL 259
+D LL DM++ Q+ N I AL+ I + Y++ +L +K +VPV+++ ++ L
Sbjct: 596 KDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQL 655
Query: 258 EDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKT 79
E F + + + N++ + F Y WL + A + HPW++F+T
Sbjct: 656 E-FAAQYPPTFDRYQGK-----NTYLEKIDGFRAYYKQWL---TVMPAEETPHPWQKFRT 706
>BC080580-1|AAH80580.1| 700|Homo sapiens pentatricopeptide repeat
domain 1 protein.
Length = 700
Score = 93.9 bits (223), Expect = 7e-19
Identities = 62/240 (25%), Positives = 116/240 (48%)
Frame = -2
Query: 798 DKFTVIGGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMHNMKIRADIDF 619
D+ +IGG E F +M+ + +PDI+T T + ++++ + AE LL + ++ AD+ F
Sbjct: 463 DRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAEFLLLALLDEHQVEADLTF 522
Query: 618 YNMLIKKRCLRLDYDXXXXXXXXXXXXXXXXXRLYPDNKKKRLNLNIMSYGVLAMACKTK 439
+N L++K+ D + L P K+ L N+ ++ LA+ C
Sbjct: 523 FNTLVRKKSKLGDLEGAKA--------------LLPVLAKRGLVPNLQTFCNLAIGCHRP 568
Query: 438 EDAEILLADMRQEQLKVNIEILGALLKHGIVNYRFDYVLYVLNIVKDEKVPVSDLFLKNL 259
+D LL DM++ Q+ N I AL+ I + Y++ +L +K +VPV+++ ++ L
Sbjct: 569 KDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQL 628
Query: 258 EDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQFKT 79
E F + + + N++ + F Y WL + A + HPW++F+T
Sbjct: 629 E-FAAQYPPTFDRYQGK-----NTYLEKIDGFRAYYKQWL---TVMPAEETPHPWQKFRT 679
>BC005399-1|AAH05399.1| 240|Homo sapiens LRRIQ1 protein protein.
Length = 240
Score = 31.9 bits (69), Expect = 3.1
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -2
Query: 327 VLYVLNIVKDEKVPVSDLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYT 148
VL+ +NI+K+ V +L L++LED + N+H T Y + S+
Sbjct: 53 VLHCINIIKNRSKAVEELILQDLEDILSCSYGAV---SNNHMHLRTGLSTEYEESSEQLI 109
Query: 147 NWLREVNIHEALKQE 103
L E+ E ++ +
Sbjct: 110 KILSEIEKEEFMRSK 124
>U54999-1|AAB40385.1| 677|Homo sapiens LGN protein protein.
Length = 677
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 705 LPLLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKKRCLRLD 580
LP L T +++ L H M N AD DF+++L+K + RLD
Sbjct: 562 LPGLRLTQNSQSVLSHLMTNDNKEADEDFFDILVKCQGSRLD 603
>CR456786-1|CAG33067.1| 677|Homo sapiens GPSM2 protein.
Length = 677
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 705 LPLLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKKRCLRLD 580
LP L T +++ L H M N AD DF+++L+K + RLD
Sbjct: 562 LPGLRLTQNSQSVLSHLMTNDNKEADEDFFDILVKCQGSRLD 603
>BC027732-1|AAH27732.1| 677|Homo sapiens G-protein signaling
modulator 2 (AGS3-like, C. elegans) protein.
Length = 677
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 705 LPLLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKKRCLRLD 580
LP L T +++ L H M N AD DF+++L+K + RLD
Sbjct: 562 LPGLRLTQNSQSVLSHLMTNDNKEADEDFFDILVKCQGSRLD 603
>AY136740-1|AAN01266.1| 677|Homo sapiens LGN protein protein.
Length = 677
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 705 LPLLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKKRCLRLD 580
LP L T +++ L H M N AD DF+++L+K + RLD
Sbjct: 562 LPGLRLTQNSQSVLSHLMTNDNKEADEDFFDILVKCQGSRLD 603
>AL449266-9|CAI14361.1| 684|Homo sapiens G-protein signalling
modulator 2 (AGS3-like, C. elegans) protein.
Length = 684
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 705 LPLLDNTTEAENKLLHTMHNMKIRADIDFYNMLIKKRCLRLD 580
LP L T +++ L H M N AD DF+++L+K + RLD
Sbjct: 569 LPGLRLTQNSQSVLSHLMTNDNKEADEDFFDILVKCQGSRLD 610
>AK022365-1|BAB14022.1| 534|Homo sapiens protein ( Homo sapiens
cDNA FLJ12303 fis, clone MAMMA1001868, weakly similar to
TRICHOHYALIN. ).
Length = 534
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -2
Query: 327 VLYVLNIVKDEKVPVSDLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYT 148
VL+ +NI+K+ V +L L++LED + N+H T Y + S+
Sbjct: 53 VLHCINIIKNRSKAVEELILQDLED-TDILSYSYGAVSNNHMHLRTGLSTEYEESSEQLI 111
Query: 147 NWLREVNIHEALKQE 103
L E+ E ++ +
Sbjct: 112 KILSEIEKEEFMRSK 126
>BC093088-1|AAH93088.1| 294|Homo sapiens LRRIQ1 protein protein.
Length = 294
Score = 30.7 bits (66), Expect = 7.1
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -2
Query: 327 VLYVLNIVKDEKVPVSDLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYT 148
VL+ +NI+K+ V +L L++LED + N+H T Y + S+
Sbjct: 53 VLHCINIIKNRSKAVEELILQDLED-TDILSCSYGAVSNNHMHLRTGLSTEYEESSEQLI 111
Query: 147 NWLREVNIHEALKQE 103
L E+ E ++ +
Sbjct: 112 KILSEIEKEEFMRSK 126
>AK056509-1|BAE46616.1| 753|Homo sapiens protein ( Homo sapiens
cDNA FLJ31947 fis, clone NT2RP7006995, highly similar
to Homo sapiens dynein, axonemal, heavy polypeptide 3
(DNAH3). ).
Length = 753
Score = 30.7 bits (66), Expect = 7.1
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = -2
Query: 267 KNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQ 88
K + DF + K+ Q+N+ KY N Y K+ + N E NI LK+ H +
Sbjct: 523 KLVSDFLIQTFKVFQKNQVGPCKYLN----VYKKYVDLLDN-TAEQNIAAFLKENHDIDD 577
Query: 87 FKTSSPETVQRQN 49
F T +R+N
Sbjct: 578 FVTKINAIKKRRN 590
>AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain
dynein type 3 protein.
Length = 4116
Score = 30.7 bits (66), Expect = 7.1
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = -2
Query: 267 KNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVNIHEALKQEHPWEQ 88
K + DF + K+ Q+N+ KY N Y K+ + N E NI LK+ H +
Sbjct: 583 KLVSDFLIQTFKVFQKNQVGPCKYLN----VYKKYVDLLDN-TAEQNIAAFLKENHDIDD 637
Query: 87 FKTSSPETVQRQN 49
F T +R+N
Sbjct: 638 FVTKINAIKKRRN 650
>AB209115-1|BAD92352.1| 1065|Homo sapiens restin isoform a variant
protein.
Length = 1065
Score = 30.3 bits (65), Expect = 9.4
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 7/158 (4%)
Frame = -2
Query: 504 KKKRLNLNIMSYGVLAMACKTKEDAEILLADMRQEQLKVNIEI-LG------ALLKHGIV 346
K K + N + V+A+ K+K + I E+LKV+ LG A LK I
Sbjct: 346 KSKLEHANKENSDVIAL-WKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIE 404
Query: 345 NYRFDYVLYVLNIVKDEKVPVSDLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNK 166
R DY + N+ ++++ K +E K MK+I++ ENS + + A ++
Sbjct: 405 KMRLDYQHEIENL-QNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQ 463
Query: 165 FSKIYTNWLREVNIHEALKQEHPWEQFKTSSPETVQRQ 52
+ L ++ E K E+F +S E V Q
Sbjct: 464 HLVEMEDTLNKLQEAEIKK-----EKFAEASEEAVSVQ 496
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,266,889
Number of Sequences: 237096
Number of extensions: 1924021
Number of successful extensions: 4518
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4518
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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