Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16e05
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 31 1.1
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z75714-8|CAB00061.1| 471|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 28 9.8
Z66495-2|CAA91267.2| 502|Caenorhabditis elegans Hypothetical pr... 28 9.8
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 9.8
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 9.8
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 28 9.8
AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical ... 28 9.8
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 28 9.8
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
defective protein 45 protein.
Length = 1076
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -2
Query: 246 EKCMKIIQQNENSHRKYSNSFETAYNKFSKIYTNWLREVN-IHEALKQEHPWEQFKTSSP 70
E+ ++ +QN+ S RK + + K K + + N I++ + +E EQF+ P
Sbjct: 618 EEMKRLDEQNKESERKRKQAEQDEIQKKIKQDQLYKMQQNAIYQEIIKEKGLEQFRDMDP 677
Query: 69 ETVQRQNIKIIEPKRFNKRNR 7
E V R+ + ++ +R + R
Sbjct: 678 EQVLREQRERLDKERAETQRR 698
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/74 (20%), Positives = 36/74 (48%)
Frame = +1
Query: 82 LKLFPRMFLLQSFMNVYFS*PISINLREFIVSCFERIGIFAMTVFILLYNFHTFFIEVL* 261
++ F + L+ +++ + N +E + S ++ F++T+ NF+TFF +
Sbjct: 118 VRAFLNISLVVRAFSLFLLASLPSNSKELLYSRITKLNNFSLTILTFCPNFNTFFFQKWR 177
Query: 262 IL*KQITNRNLFVF 303
+ +TN + +F
Sbjct: 178 RFSRHVTNFTVCLF 191
>Z75714-8|CAB00061.1| 471|Caenorhabditis elegans Hypothetical
protein ZC434.7a protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 330 YVLYVLNIVKDEKVPVSDLFLKNLEDFNEKCMKIIQQNENSHRKYSNSFETAYNKFSKI 154
Y+ V + + DE+ + L LK L+D EKC Q E+ + S + A FSK+
Sbjct: 98 YIAVVYHSINDEE---ARLTLKRLKDNIEKCKIHKMQEEHDKFRMSLDQDAAIPDFSKV 153
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 780 GGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMH 649
G E F A K D L L+D T+ A N L T+H
Sbjct: 129 GSHESFETTTDAKRAKFDNSLLISSLQLIDKTSSAGNAKLSTLH 172
>Z66495-2|CAA91267.2| 502|Caenorhabditis elegans Hypothetical
protein C36A4.2 protein.
Length = 502
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 315 LNIVKDEKVPVSDLFLKNLEDFNEKCM-KIIQQNENSHRKYSNSFETAY 172
+NIV + + ++F+KN +F+++ + I N+ + N++ T +
Sbjct: 86 MNIVLSNEEDIKEVFIKNFSNFSDRIVPPIFDSNQLNQSLLQNTYATGW 134
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 93 EQFKTSSPETVQRQNIKIIEPKRFNKRN 10
E + PE VQ+Q K++E + F+++N
Sbjct: 588 ESIIAAQPEPVQKQTSKVVEQQTFSRQN 615
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 93 EQFKTSSPETVQRQNIKIIEPKRFNKRN 10
E + PE VQ+Q K++E + F+++N
Sbjct: 588 ESIIAAQPEPVQKQTSKVVEQQTFSRQN 615
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 780 GGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMH 649
G E F A K D L L+D T+ A N L T+H
Sbjct: 129 GSHESFETTTDAKRAKFDNSLLISSLQLIDKTSSAGNAKLSTLH 172
>AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical
protein H27C11.1b protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 780 GGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMH 649
G E F A K D L L+D T+ A N L T+H
Sbjct: 29 GSHESFETTTDAKRAKFDNSLLISSLQLIDKTSSAGNAKLSTLH 72
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 780 GGQEDFXEEMSAYSVKPDIKTFTQMLPLLDNTTEAENKLLHTMH 649
G E F A K D L L+D T+ A N L T+H
Sbjct: 129 GSHESFETTTDAKRAKFDNSLLISSLQLIDKTSSAGNAKLSTLH 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,538,497
Number of Sequences: 27780
Number of extensions: 347437
Number of successful extensions: 1121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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